search

owlcollab / owltools

OWLTools
BSD 3-Clause "New" or "Revised" License
108 stars 33 forks source link

Duplicated entries after map2slim #272

Open KristinaGagalova opened 5 years ago

KristinaGagalova commented 5 years ago

Hi, I am mapping with to a go slim with the following command

java -jar $owlTools $oboBasic --gaf $input_gaf --map2slim  -u unmapped.gaf \
        --idfile $goSlim --write-gaf my_Slimgo_terms_plant.txt

After the mapping I have several duplicated entries (entire lines) in the mapped output:

wc -l my_Slimgo_terms_plant.txt
#633907
sort my_Slimgo_terms_plant.txt | uniq | wc -l
#612897

I don't have any duplicated entries in the my input_gaf.

Version:

java -jar /home/kgagalova/src/owltools --version
git-revision-sha1   f90176d5849278d8fc01e839e444408c8e9445be
git-revision-url    https://github.com/owlcollab/owltools/commit/f90176d5849278d8fc01e839e444408c8e9445be
git-branch  origin/master
git-dirty   true

Is there any reason why there are those entries? Thanks in advance for the repply