Open balhoff opened 4 years ago
How this works:
http://purl.obolibrary.org/obo/go/extensions/substance_by_role.owl
, which is actually served from the GO release imports
folder and magically found by a line in the GO build catalog file: https://github.com/geneontology/go-ontology/blob/2fe891866790048684448260baca4fbe2d53e057/src/ontology/catalog-v001.xml#L9substance_by_role.owl
defines GOCHE terms which have logical definitions making a chemical entity for each roleNot sure how substance_by_role.owl
was originally created.
@cmungall is the solution for the immediate problem to simply completely remove the import of substance_by_role.owl
?
This will leave all these substance terms without labels. Perhaps instead we need a version of this file with logical definitions removed?
From 2019-10-28 ontology editors call:
@balhoff will create a branch with the substance_by_role.owl removed to see what effects this might have on inferences.
Not sure how substance_by_role.owl was originally created.
Update: substance_by_role.owl
is made by the GO ontology makefile:
See https://github.com/geneontology/go-ontology/issues/17911#issuecomment-544609253