owlcollab / owltools

OWLTools
BSD 3-Clause "New" or "Revised" License
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Feature request: Need simple IC score generation #289

Open matentzn opened 4 years ago

matentzn commented 4 years ago

In good old swiss army knife fashion, i relatively urgently need a command that generates the IC scores or some input ontology. So ontology in, table out:

Class IC
HP:001 2.3
HP:002 0.1

This should complement an existing function that generates the phenodigm scores.

owltools --sim-save-phenodigm-class-scores -m 2.5 -x HP,HP -a scores.txt

Note that during the cause of next year, we will move this stuff to phenol; just not right now, has the human cost is too high.. Would someone be able to do this? Thanks a lot.