Website improvements - Githubissues

ywteh commented 4 years ago

ywteh commented 4 years ago

Hi @avishkar58 here's what I think could be a simple visualisation:

Left pane: simple UK map (no transport links/cities, just UTLA areas)
Right pane: information about UTLA. Shows: name, # cases last 7 days, # cases last 7 days per 100k population, total cases so far, Rt credible interval, plot of # cases per day along with projection of cases over next 3 weeks (with uncertainties).
when mouse hover over UTLA, highlights it and shows UTLA name and brief information (# cases last 7 days, Rt credible interval) somewhere
when a UTLA is clicked, instead of a pop-up on map, it just loads up information about that UTLA on right pane. Map zoom level does not change, and map does not centre on UTLA.
static webpage that can be embedded in github.io blog entry without server. Regenerated every day.

Other nice haves, but not necessary: # death and deaths over time.

Happy to hear other's thoughts.

avishkar58 commented 4 years ago

Added prototype static visualisation site (index.html) using D3.js - it's extremely flexible so we can do pretty much whatever we want with it.

Still TODO:

We'll need some zooming because currently it's hard to see the London areas, will make it unobtrusive though (eg using buttons only)
Add cases stats
Add labels, titles etc (surprisingly hard to do because in d3 you have to manually position the text on the output SVG 😕 )
~Improve styling~
~Add projections to chart~
~Add a basic Python server to serve local version of RtCProj.csv, currently it's loading the one on Github because Javascript running in a browser can't load local files for security~

ywteh commented 4 years ago

TODOs:

[x] report case counts and projects per 100k population instead of absolute numbers
[x] report Rt's over time: Rt plot on right panel
[x] report Rt's over time: visualise Rt's in different weeks on map. use slider?
[x] map cases per week per 100k over time. using slider as well? include projected cases over subsequent 7 days on map as well.
[x] show percentiles (10,20,30,..90%) of posterior Rt as way to visualise uncertainty.
[x] hover numbers for right panel plots
[x] show Rt and case # values on colour bar.
[x] show 25% and 75% posterior quantile values as well on right panel.
[x] highlight selected LTLA in map
[x] plot 7 day average on last day rather than middle day
[x] make colour scheme colour blind friendly.
[x] tooltip cases for merged local authorities not working. (issue with sites_data.csv?)
[x] Prob(Rt>tau) (with grey at 50%) exceedance probability
[x] fix colorbar ticks and scale.

oxcsml / epimap