search

oxfordmmm / gnomonicus

Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
Other
5 stars 0 forks source link

`gene` is called `gene_name` in `variants` #33

Open philipwfowler opened 11 months ago

philipwfowler commented 11 months ago

Very minor (!). Rename gene_name to gene in the variants.csv so is consistent with the other tables.

JeremyWesthead commented 11 months ago

Fixed for the CSV - the JSON still calls it gene_name, which I've left as is for now for 2 reasons:

  1. Changing it may break the GPAS summary JSON
  2. I'd have to spend a while fixing tests

If you think it should be changed there too, I can write a ticket for it