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oxfordmmm / gnomonicus

Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
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`gene_name` --> `gene` in variants.csv for #33 #34

Closed JeremyWesthead closed 11 months ago

JeremyWesthead commented 11 months ago

Fixed for the CSV - the JSON still calls it gene_name, which I've left as is for now for 2 reasons:

  1. Changing it may break the GPAS summary JSON
  2. I'd have to spend a while fixing tests which may currently be better spent on other things

I'll write a ticket for it so we can double check with the summary JSON