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oxfordmmm / gnomonicus

Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
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Added error handling to temporarily appease oxfordmmm/gumpy#24 #35

Closed JeremyWesthead closed 11 months ago

JeremyWesthead commented 11 months ago

Adds a warning, and tracks whenever an exception occurs while getting the minor populations at a gene level. Warning is printed, and the error is added to the JSON in an error block - mapping the gene it affects to the stack trace of the error