Feat/gvcf support - Githubissues

oxfordmmm / gnomonicus

Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants

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Feat/gvcf support #68

Closed JeremyWesthead closed 3 months ago

JeremyWesthead commented 3 months ago

Tests will fail until https://github.com/oxfordmmm/gumpy/pull/32 is merged

Adds support for merging rows of a GVCF into a minos VCF. This can be used to add coverage values to null calls while avoiding having to FASTA adjudicate