This is the cause of this failure https://dev.portal.gpas.world/samples/37fd971f-d17f-4e28-91f7-718c3268f075
Essentially fetching the positions from the minos ignored an edge case where deletions could make it through; especially problematic as deletions are populated in the gvcf too. gumpy errors on duplicate positions, so this should filter out any rows already in the minos
This is the cause of this failure https://dev.portal.gpas.world/samples/37fd971f-d17f-4e28-91f7-718c3268f075 Essentially fetching the positions from the minos ignored an edge case where deletions could make it through; especially problematic as deletions are populated in the gvcf too.
gumpyerrors on duplicate positions, so this should filter out any rows already in the minos