search

p-j-smith / lipyphilic-tutorials

Interactive tutorials for getting the most out of lipyphilic
Creative Commons Attribution Share Alike 4.0 International
2 stars 5 forks source link

Study Hidden Markov Models (HMM) error #4

Open yang-guoli opened 2 years ago

yang-guoli commented 2 years ago

Describe the bug A clear and concise description of what the bug is. i was to rerun the HMM code by use own xtc and tpr files, but it report the error as follow:

image

To Reproduce A minimal working example of code to reproduce the unexpected behaviour. image ...... image

Expected behaviour A clear and concise description of what you expected to happen. image

Actual behaviour Be a specific and detailed as you can. Paste any output or stack traces of errors you receive. image

Additional context

p-j-smith commented 1 year ago

Hi @yang-guoli sorry again for the slow reply. For some reason your thickness.z_thickness array has twice the number of lipids as your membrane atom group. Did you make the same selections when running the thickness calculation and creating the membrane group?