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p4rkerw / Muto_Wilson_NComm_2020

Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
MIT License
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Barcode cell type annotation labels #2

Closed RegnerM2015 closed 3 years ago

RegnerM2015 commented 3 years ago

Hi @p4rkerw @ymuto802

Would you be able to point me in the right direction of cell type annotations for the barcodes?

I am looking on GEO here:https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE151302

It looks like there are just feature barcode matrices. If you could provide a table or file showing the cell type annotations for every barcode in each sample, that would be greatly appreciated!

p4rkerw commented 3 years ago

Thanks for the comment. I dropped a csv file in the snRNA_prep and snATAC_prep directories with their respective barcode-sample-celltype annotations. There's additional metadata on the cellxgene website but this will make them easy to find. - Parker