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p4rkerw / Muto_Wilson_NComm_2020

Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
MIT License
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About Figure 3a #5

Closed anlin00007 closed 2 years ago

anlin00007 commented 2 years ago

Hello,

I am trying to replicate the Figure 3a, heatmap of ChromVAR motifs. However, I couldn't find the file 'cellranger_atac_prep/chromVar.atacAggr_sub97_control.rds'. Could you point me the location of that file?

Thanks

p4rkerw commented 2 years ago

Hello Anlin00007, This file is not publicly-available but you can generate it using the processed datasets in GEO and code in the repository

anlin00007 commented 2 years ago

In this case, may I have a clear version of the figure 3a with the row names available? I am interested in what TFs are included in each cluster.