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pBFSLab / FastCSR

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Pial surface generation fails #1

Closed ferraridamiano closed 10 months ago

ferraridamiano commented 2 years ago

Hi and thank you for this really interesting project! I succesfully ran the software in the native environment but unfortunately when I set the --pial option it fails at the last step: Surface optimization failed (while if I remove it, it works)

In pipeline.py I saw this: https://github.com/IndiLab/FastCSR/blob/f1f95d964babb77dfa6976847b0ad5130e06dea3/pipeline.py#L281-L290

As far as I know there is not a -white option in the recon-all command (or maybe I missed something)

weiwei2021 commented 1 year ago

@ferraridamiano Hi, can you provide the log of the program or the detail about the fails? I have tested the pial surface generation code on my computer and it is work well. The -white is a available option that you can find it in recon-all script or freesurfer wiki(https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllTableStableV6.0)