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pFindStudio / pFind3

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Definition of amino acid X #54

Closed cctsou closed 3 years ago

cctsou commented 3 years ago

I am using ensembl FASTA file which contains unknown amino acid as X. How does pfind deal with peptides with amino acid X? It looks like it has a specific assumption for amino acid X. Is there any way to exclude peptides with amino acid X as candidates?

jalew188 commented 3 years ago

X should be I/L in pFind, you can check aa.ini in the bin folder or open pConfig to check.