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pFindStudio / pGlyco2

pGlyco is a software tool dedicated for the analysis of intact glycopeptides/glycoproteins using mass spectrometry.
http://pfind.ict.ac.cn/software/pGlyco/
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pGlyco 2.1.2 #13

Closed asifklm closed 6 years ago

asifklm commented 6 years ago

I started a search using an N-glycosylated glycoprotein LC-MS/MS file but it didn't assign any glycopeptide even though the file contains N-glycopeptide which was confirmed by Byonic software search. The output .txt file is empty as well.

jalew188 commented 6 years ago

Make sure MSFileReader 3.0 (both 32/64 bit) is installed.

And please check issue #1 first to make sure your data or config are good for pGlyco2.

asifklm commented 6 years ago

Thank you, It worked! Now I got a glycopeptide annotation list and the search was really quick.

Thank you pGlyco team

regards

Asif

From: Jalew notifications@github.com Sent: Saturday, June 30, 2018 12:19:12 AM To: pFindStudio/pGlyco2 Cc: Asif Shajahan; Author Subject: Re: [pFindStudio/pGlyco2] pGlyco 2.1.2 (#13)

Following these instructions to find out what's going on:

Make sure MSFileReader 3.0 (both 32/64 bit) is installed.

And please check issue #1https://github.com/pFindStudio/pGlyco2/issues/1 first to make sure your data or config are good for pGlyco2.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/pFindStudio/pGlyco2/issues/13#issuecomment-401515994, or mute the threadhttps://github.com/notifications/unsubscribe-auth/Amz2wKwmqTZLVFrzOH4Zh79i3Ph5wjrvks5uBvxAgaJpZM4U9FXP.

jalew188 commented 6 years ago

:)