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pFindStudio / pGlyco2

pGlyco is a software tool dedicated for the analysis of intact glycopeptides/glycoproteins using mass spectrometry.
http://pfind.ict.ac.cn/software/pGlyco/
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Some glycopeptides cannot be plotted in gLabel #17

Open lonelu opened 5 years ago

lonelu commented 5 years ago

gLable batch works for one of my tasks, but in a recent task, it output " Finish batch output 0 GPSMs, 0.002 seconds Finish batch output no psm of spectrum "02-06-17_insoln_tryp_no-dyn_plus-one.3383.3383.3.0.dta" in result files Whie in the result file, I have three glycopeptide identified:

GlySpec PepSpec RT PrecursorMH Rank Peptide Mod PeptideMH Glycan(H,N,A,G,F) PlausibleStruct GlyID GlyFrag GlyMass GlySite TotalScore PepScore GlyScore CoreMatched CoreFuc MassDeviation PPM GlyIonRatio PepIonRatio GlyDecoy PepDecoy GlycanFDR PeptideFDR TotalFDR
02-06-17_insoln_tryp_no-dyn_plus-one.3383.3383.3.0.dta 02-06-17_insoln_tryp_no-dyn_plus-one.3383.3383.3.0.dta 2072.953 3116.338 1 TKPREEQYJSTYR null 1671.809 3 4 0 0 1 (N(F)(N(H(H(N))(H(N))))) 96 0 1 0 0 0 ;0 1 0 0 1 ;0 2 0 0 0 ;0 2 0 0 1 ;1 2 0 0 0 ;1 2 0 0 1 ;2 2 0 0 0 ;2 2 0 0 1 ;3 2 0 0 0 ;2 3 0 0 0 ;3 2 0 0 1 ;2 3 0 0 1 ;3 3 0 0 0 ;3 3 0 0 1 ;3 4 0 0 0 ; 1444.534 9 25.53344 0.50147 72.02138 9 12 -0.00398 -1.27672 1 0.08333 0 0 0 0 0

Did I do something wrong?

jalew188 commented 5 years ago

@lonelu In your result, the PepScore is too low. You can set the lowest score in glabel.gconf.

jalew188 commented 5 years ago

@lonelu Is this problem solved?