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pFindStudio / pGlyco3

Apache License 2.0
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0 and -1 values in output files #14

Open kinga703 opened 2 years ago

kinga703 commented 2 years ago

Hi,

There is a problem with all output files with pGlyco3. I get 0 and -1 for each GlycanFDR, PeptideFDR, TotalFDR. This problem also occurs in other columns e.g. GlyDecoy, PepDecoy, GlyPEP, PeptidePEP, Scan..

jalew188 commented 2 years ago

What kinds of raw file did you use?

kinga703 commented 2 years ago

I used raw Bruker MGF files (in pGlyco I chose mgf). (I performed DDA measurements with mixture of 3 standard glycoproteins tryptic digest on Bruker QTOF instrument with CID fragmentation mode (in pGlyco I chose HCD)).

jalew188 commented 1 year ago

Bruker file is not supported yet