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pFindStudio / pGlyco3

Apache License 2.0
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Processing Error #30

Closed Yungstedt closed 9 months ago

Yungstedt commented 10 months ago

I'm running the latest release, but the program stopped at this error: Process ID=03148: Unhandled Exception: System.IO.FileNotFoundException: Could not load file or assembly 'Base, Version=1.0.0.0, Culture=neutral, PublicKeyToken=null' or one of its dependencies. The system cannot find the file specified. Process ID=03148: at CombineMS2.Program.Main(String[] args)

Yungstedt commented 10 months ago

Another error happend when converting O-glycan gdb from gwp Traceback (most recent call last): File "glycoworkbench_to_gdb.py", line 211, in File "glycoworkbench_to_gdb.py", line 196, in ReadOneGWP File "glycoworkbench_to_gdb.py", line 116, in generate_subtree_by_gwb File "glycoworkbench_to_gdb.py", line 93, in generate_subtree_by_gwb UnboundLocalError: local variable 'i' referenced before assignment [15384] Failed to execute script 'glycoworkbench_to_gdb' due to unhandled exception!

jalew188 commented 10 months ago

I'm running the latest release, but the program stopped at this error: Process ID=03148: Unhandled Exception: System.IO.FileNotFoundException: Could not load file or assembly 'Base, Version=1.0.0.0, Culture=neutral, PublicKeyToken=null' or one of its dependencies. The system cannot find the file specified. Process ID=03148: at CombineMS2.Program.Main(String[] args)

This seems like .NET version's problem, check dotnet --version

jalew188 commented 10 months ago

Another error happend when converting O-glycan gdb from gwp Traceback (most recent call last): File "glycoworkbench_to_gdb.py", line 211, in File "glycoworkbench_to_gdb.py", line 196, in ReadOneGWP File "glycoworkbench_to_gdb.py", line 116, in generate_subtree_by_gwb File "glycoworkbench_to_gdb.py", line 93, in generate_subtree_by_gwb UnboundLocalError: local variable 'i' referenced before assignment [15384] Failed to execute script 'glycoworkbench_to_gdb' due to unhandled exception!

This is indeed a bug due to I changed the python version from 2.7 to 3.9. I have fixed it int he new version. You can download it from the release page now with pyinstaller-6.0.0 from https://github.com/pFindStudio/pGlyco3/releases

Yungstedt commented 10 months ago

I'm running the latest release, but the program stopped at this error: Process ID=03148: Unhandled Exception: System.IO.FileNotFoundException: Could not load file or assembly 'Base, Version=1.0.0.0, Culture=neutral, PublicKeyToken=null' or one of its dependencies. The system cannot find the file specified. Process ID=03148: at CombineMS2.Program.Main(String[] args)

This seems like .NET version's problem, check dotnet --version

I checked I installed .NET 6.0 and 8.0, with 3.5 feature enabled in Windows 10. Could you please tell me what is the targeting version of pGlyco3?

Yungstedt commented 10 months ago

Another error happend when converting O-glycan gdb from gwp Traceback (most recent call last): File "glycoworkbench_to_gdb.py", line 211, in File "glycoworkbench_to_gdb.py", line 196, in ReadOneGWP File "glycoworkbench_to_gdb.py", line 116, in generate_subtree_by_gwb File "glycoworkbench_to_gdb.py", line 93, in generate_subtree_by_gwb UnboundLocalError: local variable 'i' referenced before assignment [15384] Failed to execute script 'glycoworkbench_to_gdb' due to unhandled exception!

This is indeed a bug due to I changed the python version from 2.7 to 3.9. I have fixed it int he new version. You can download it from the release page now with pyinstaller-6.0.0 from https://github.com/pFindStudio/pGlyco3/releases

I started by testing conversion of N-glycan database this time, but it encountered a new error below.

Already registered! N Traceback (most recent call last): File "glycoworkbench_to_gdb.py", line 211, in File "glycoworkbench_to_gdb.py", line 196, in ReadOneGWP File "glycoworkbench_to_gdb.py", line 93, in generate_subtree_by_gwb UnboundLocalError: local variable 'j' referenced before assignment [2916] Failed to execute script 'glycoworkbench_to_gdb' due to unhandled exception!

jalew188 commented 9 months ago

I'm running the latest release, but the program stopped at this error: Process ID=03148: Unhandled Exception: System.IO.FileNotFoundException: Could not load file or assembly 'Base, Version=1.0.0.0, Culture=neutral, PublicKeyToken=null' or one of its dependencies. The system cannot find the file specified. Process ID=03148: at CombineMS2.Program.Main(String[] args)

This seems like .NET version's problem, check dotnet --version

I checked I installed .NET 6.0 and 8.0, with 3.5 feature enabled in Windows 10. Could you please tell me what is the targeting version of pGlyco3?

I think all .NET framework versions fine, there may be some issues on diff version of .NET core