Exception ignored in: 'MDAnalysis.lib.formats.libdcd.DCDFile._read_header' OSError: Reading DCD header failed: premature EOF found in DCD file

pablo-arantes / making-it-rain

Cloud-based molecular simulations for everyone

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Exception ignored in: 'MDAnalysis.lib.formats.libdcd.DCDFile._read_header' OSError: Reading DCD header failed: premature EOF found in DCD file #42

Closed marionamujal closed 1 year ago

marionamujal commented 1 year ago

I get the above error using Gromacs input files, I cannot proceed to concatenate and align the trajectory. OSError: opened empty file. No frames are saved

pablo-arantes commented 1 year ago

Hi @marionamujal,

Sorry for my delay. Thank you for letting me know about the issue. I will check and back to you.

Best,

Pablo

pablo-arantes commented 1 year ago

HI @marionamujal,

I've checked here and everything is working fine for me. Please, check if you are using the same Google Drive Path, Jobname, Number of strides, stride time and trajectory saved frequency that you have been used to run your simulation in the previous steps.

Thank you.

Best,

Pablo