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pachterlab
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gget
🧬 gget enables efficient querying of genomic reference databases
https://gget.bio
BSD 2-Clause "Simplified" License
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gget opentargets -r diseases
#168
adeslatt
opened
8 minutes ago
0
error in 'gget setup alphafold'
#167
mikenada
opened
1 week ago
5
Very cool tool -- unfortunately it appears that the `gpt` module is not working
#166
adeslatt
closed
1 week ago
6
Enable querying of multiple genes in Bgee API
#165
vecerkovakaterina
opened
3 weeks ago
0
Add modules to interface with new projects from the Enrichr/Archs4 group
#164
lauraluebbert
opened
1 month ago
0
Update bgee module to new endpoint
#163
lauraluebbert
opened
1 month ago
0
Alliance Genome Resources
#162
lakigigar
opened
1 month ago
0
Pineapple module to download bio-imaging data
#161
lauraluebbert
opened
1 month ago
0
Synching delphy_dev with main/dev
#160
lauraluebbert
closed
1 month ago
0
requirements.txt: Allow using newer mysql-connector versions
#159
Pandapip1
closed
1 month ago
1
gget_setup.py: Several fixes
#158
Pandapip1
closed
1 month ago
2
numpy dependencie problems
#157
vmindel
closed
1 month ago
3
New modules and gget mutate improvements
#156
lauraluebbert
closed
1 month ago
0
fix cbio search test
#155
techno-sam
closed
4 months ago
0
fix compat with older versions of python
#154
techno-sam
closed
4 months ago
0
Add modEnrichr support to gget enrichr
#153
techno-sam
closed
4 months ago
0
Bgee module
#152
techno-sam
closed
4 months ago
0
ENCODE downloader
#151
abearab
opened
4 months ago
2
Who needs unit tests anyway?
#150
techno-sam
closed
4 months ago
0
Convert gget mutate tests to json format
#149
techno-sam
closed
4 months ago
0
cbio: allow users to specify custom filename and title for figures
#148
techno-sam
closed
4 months ago
0
Bulk lookup for gget info and gget seq
#147
techno-sam
closed
4 months ago
0
cbio: fix support for pre-2.1.0 pandas
#146
techno-sam
closed
4 months ago
0
cBioPortal Module
#145
techno-sam
closed
4 months ago
0
Bgee module
#144
lakigigar
closed
1 month ago
1
OpenTargets enhancements
#143
techno-sam
closed
4 months ago
0
OpenTargets API
#142
techno-sam
closed
4 months ago
0
Add output folder flag to gget ref
#141
techno-sam
closed
4 months ago
0
Specify an output folder for downloaded reference with gget ref
#140
josephrich98
closed
1 month ago
1
Hello thanks for the wonderful package. Can you please add support for this https://www.gsea-msigdb.org/gsea/msigdb/ Especially for getting gene sets
#139
cakeinspace
opened
5 months ago
0
Add module to collect data from Genomics 2 Proteins portal
#138
abearab
opened
5 months ago
0
Sync dev and main
#137
lauraluebbert
closed
5 months ago
0
Dev -> main
#136
lauraluebbert
closed
5 months ago
0
Updated inversion function and commented out test in gget_mutate
#135
josephrich98
closed
5 months ago
0
Sync dev and main
#134
lauraluebbert
closed
5 months ago
0
Dev -> main
#133
lauraluebbert
closed
5 months ago
0
sync main and dev
#132
lauraluebbert
closed
5 months ago
0
Dev -> main
#131
lauraluebbert
closed
5 months ago
0
Cosmic dev -> main
#130
lauraluebbert
closed
5 months ago
0
Issue finding ensembl database for homo_sapiens release 112 37
#129
JackCurragh
closed
5 months ago
3
Create gget_mutate.py
#128
josephrich98
closed
6 months ago
0
matching dev and main
#127
lauraluebbert
closed
6 months ago
0
matching dev and main
#126
lauraluebbert
closed
6 months ago
0
Dev -> Main: minor website updates
#125
lauraluebbert
closed
6 months ago
0
Dataverse data access module
#124
abearab
opened
7 months ago
8
Fix Windows issue with gget setup elm
#123
lauraluebbert
closed
9 months ago
0
Add " to Windows command
#122
mboffelli
closed
9 months ago
0
Add module to depmap database
#121
lauraluebbert
closed
1 month ago
2
Dev -> main
#120
lauraluebbert
closed
10 months ago
0
Is it possible to get all ELM's using gget?
#119
Abhishaike
closed
10 months ago
4
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