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pachterlab
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gget
🧬 gget enables efficient querying of genomic reference databases
https://gget.bio
BSD 2-Clause "Simplified" License
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numpy dependencie problems
#157
vmindel
opened
1 week ago
2
New modules and gget mutate improvements
#156
lauraluebbert
opened
3 weeks ago
0
fix cbio search test
#155
techno-sam
closed
1 month ago
0
fix compat with older versions of python
#154
techno-sam
closed
1 month ago
0
Add modEnrichr support to gget enrichr
#153
techno-sam
closed
1 month ago
0
Bgee module
#152
techno-sam
closed
1 month ago
0
ENCODE downloader
#151
abearab
opened
2 months ago
2
Who needs unit tests anyway?
#150
techno-sam
closed
2 months ago
0
Convert gget mutate tests to json format
#149
techno-sam
closed
2 months ago
0
cbio: allow users to specify custom filename and title for figures
#148
techno-sam
closed
2 months ago
0
Bulk lookup for gget info and gget seq
#147
techno-sam
closed
2 months ago
0
cbio: fix support for pre-2.1.0 pandas
#146
techno-sam
closed
2 months ago
0
cBioPortal Module
#145
techno-sam
closed
2 months ago
0
Bgee module
#144
lakigigar
opened
2 months ago
0
OpenTargets enhancements
#143
techno-sam
closed
2 months ago
0
OpenTargets API
#142
techno-sam
closed
2 months ago
0
Add output folder flag to gget ref
#141
techno-sam
closed
2 months ago
0
Specify an output folder for downloaded reference with gget ref
#140
josephrich98
opened
2 months ago
0
Hello thanks for the wonderful package. Can you please add support for this https://www.gsea-msigdb.org/gsea/msigdb/ Especially for getting gene sets
#139
cakeinspace
opened
2 months ago
0
Add module to collect data from Genomics 2 Proteins portal
#138
abearab
opened
3 months ago
0
Sync dev and main
#137
lauraluebbert
closed
3 months ago
0
Dev -> main
#136
lauraluebbert
closed
3 months ago
0
Updated inversion function and commented out test in gget_mutate
#135
josephrich98
closed
3 months ago
0
Sync dev and main
#134
lauraluebbert
closed
3 months ago
0
Dev -> main
#133
lauraluebbert
closed
3 months ago
0
sync main and dev
#132
lauraluebbert
closed
3 months ago
0
Dev -> main
#131
lauraluebbert
closed
3 months ago
0
Cosmic dev -> main
#130
lauraluebbert
closed
3 months ago
0
Issue finding ensembl database for homo_sapiens release 112 37
#129
JackCurragh
closed
3 months ago
3
Create gget_mutate.py
#128
josephrich98
closed
3 months ago
0
matching dev and main
#127
lauraluebbert
closed
4 months ago
0
matching dev and main
#126
lauraluebbert
closed
4 months ago
0
Dev -> Main: minor website updates
#125
lauraluebbert
closed
4 months ago
0
Dataverse data access module
#124
abearab
opened
4 months ago
3
Fix Windows issue with gget setup elm
#123
lauraluebbert
closed
7 months ago
0
Add " to Windows command
#122
mboffelli
closed
7 months ago
0
Add module to depmap database
#121
lauraluebbert
opened
7 months ago
1
Dev -> main
#120
lauraluebbert
closed
7 months ago
0
Is it possible to get all ELM's using gget?
#119
Abhishaike
closed
7 months ago
4
Module to download MitoCarta3 database
#118
lauraluebbert
opened
8 months ago
0
Add module to COSMIC database
#117
AubakirovArman
closed
7 months ago
1
Update elm.md
#116
anhchi172
closed
8 months ago
0
KeyError: 'Primary_Acc'
#115
CLZHANG96
closed
8 months ago
3
Add module for reactome
#114
lauraluebbert
opened
9 months ago
0
Add error message for NCBI server overload and reduce NCBI unit tests
#113
lauraluebbert
closed
9 months ago
0
Add module to COSMIC database
#112
lauraluebbert
closed
7 months ago
0
Fix bug in gget cellxgene
#111
lauraluebbert
closed
10 months ago
0
gget.cellxgene TileDBError error when trying to return anndata
#110
rpeys
closed
10 months ago
4
Dev -> main
#109
lauraluebbert
closed
10 months ago
0
Elm -> dev
#108
lauraluebbert
closed
10 months ago
0
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