pachterlab / gget

🧬 gget enables efficient querying of genomic reference databases
https://gget.bio
BSD 2-Clause "Simplified" License
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Add module to COSMIC database #117

Closed AubakirovArman closed 9 months ago

AubakirovArman commented 9 months ago

Add module to COSMIC database #112 """ COSMIC, the Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer. Start using COSMIC by searching for a gene, cancer type, mutation, etc. below. (https://cancer.sanger.ac.uk/cosmic/).

Args:
- name      by searching for a gene, cancer type, mutation, etc. below.
- limit     Number of rows to return (default: 100).
- types      'mutations' (default) or 'pubmed', 'genes','studies','samples'.
- json          If True, returns results in json format instead of data frame. Default: False.
- save          True/False whether to save the results in the local directory.
- verbose        True/False whether to print progress information. Default True.

Returns a data frame with the requested results.
"""
lauraluebbert commented 9 months ago

Amazing, thank you!!