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pachterlab / kallisto-transcriptome-indices

Reference transcriptome indices build from kallisto for popular organisms
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Indices downloaded through command line outdated #8

Closed shashkat closed 6 months ago

shashkat commented 6 months ago

Hi, I observed that the indices which are downloaded using this command:

kb ref -d zebrafish -i index.idx -g t2g.txt

appear to be outdated. They give this output with kallisto quant command on kallisto version 0.50.1. 

Error: incompatible indices. Found version 10, expected version 13
Rerun with index to regenerate%

I believe that shouldn't be the case, as the ones on the releases page (at the very top of the Readme) are updated. Hence, I thought to inform.

Anyways, thanks for making this awesome tool!

Yenaled commented 6 months ago

Works fine on my end with kb-python 0.28.0.

shashkat commented 6 months ago

Ohh okay, thanks for confirming! Probably the error is due to my kallisto which was installed using brew.