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pachterlab / kallisto

Near-optimal RNA-Seq quantification
https://pachterlab.github.io/kallisto
BSD 2-Clause "Simplified" License
631 stars 168 forks source link

h5 file not present in output #362

Open VetAshish opened 1 year ago

VetAshish commented 1 year ago

i run kallisto on ubuntu 20.04 it produce three output files, but when i run kallisto on mac it produce only two files, h5 file missing. sharing commond line used in this operation Screenshot from 2022-11-10 09-42-30

pmelsted commented 1 year ago

Did you compile the version yourself or use the release version from github? If you compile it yourself and require the hdf5 files you have to use

cmake .. -DUSE_HDF5=ON

to build kallisto with hdf5 support on your machine. The release versions are compiled with HDF5 support.

VetAshish commented 1 year ago

Thank You for your reply

On Thu, 10 Nov, 2022, 20:41 Pall Melsted, @.***> wrote:

Did you compile the version yourself or use the release version from github? If you compile it yourself and require the hdf5 files you have to use

cmake .. -DUSE_HDF5=ON

to build kallisto with hdf5 support on your machine. The release versions are compiled with HDF5 support.

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