Hi, I have been using kb-python to analyze scRNA-seq. first, thanks for creating such a user-friendly and useful tool. I appreciate it! I just had a technical issue when reanalyzing scRNA-seq in this paper by Lau et al in which they have used MARS-seq. My question is that when I wanted to run kb count , I couldn't figure out what would the best code to use to specify umi/barcos of the mars-seq (-x). I couldn't find mars-seq when I ran kb --list and i tried a few codes but was not successful. I was hoping that you may have encountered this issue before or may have already a solution for it. Thanks!
Hi, I have been using kb-python to analyze scRNA-seq. first, thanks for creating such a user-friendly and useful tool. I appreciate it! I just had a technical issue when reanalyzing scRNA-seq in this paper by Lau et al in which they have used MARS-seq. My question is that when I wanted to run
kb count, I couldn't figure out what would the best code to use to specify umi/barcos of the mars-seq (-x). I couldn't find mars-seq when I rankb --listand i tried a few codes but was not successful. I was hoping that you may have encountered this issue before or may have already a solution for it. Thanks!