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pachterlab / kallistobustools

kallisto | bustools workflow for pre-processing single-cell RNA-seq data
https://kallistobus.tools/
MIT License
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kallisto bus is not avaialble #11

Closed liu-xingliang closed 4 years ago

liu-xingliang commented 4 years ago 
conda --version
# conda 4.8.2

conda install -c bioconda kallisto
conda install -c bioconda bustools

# try to follow the link:
# https://www.kallistobus.tools/multiple_files_tutorial.html

kallisto bus
Error: invalid command bus
kallisto 0.44.0

Usage: kallisto <CMD> [arguments] ..

Where <CMD> can be one of:

    index         Builds a kallisto index 
    quant         Runs the quantification algorithm 
    pseudo        Runs the pseudoalignment step 
    h5dump        Converts HDF5-formatted results to plaintext
    inspect       Inspects and gives information about an index
    version       Prints version information
    cite          Prints citation information

Thank you!

liu-xingliang commented 4 years ago

Sorry my bad, a stupid environment mixture (module load and conda)