Hello, thanks for putting together this wrapper and the helpful tutorials! I was trying to run count on the example data from the RNA velocity tutorial and keep getting the following error:
Traceback (most recent call last):
File "/home/kkiani/tools/anaconda3/envs/inari/bin/kb", line 10, in
sys.exit(main())
File "/home/kkiani/tools/anaconda3/envs/inari/lib/python3.7/site-packages/kb_python/main.py", line 837, in main
COMMAND_TO_FUNCTION[args.command](parser, args, temp_dir=temp_dir)
File "/home/kkiani/tools/anaconda3/envs/inari/lib/python3.7/site-packages/kb_python/main.py", line 218, in parse_count
temp_dir=temp_dir
File "/home/kkiani/tools/anaconda3/envs/inari/lib/python3.7/site-packages/kb_python/count.py", line 1510, in count_velocity
fastqs, index_paths[0], technology, out_dir, threads=threads
File "/home/kkiani/tools/anaconda3/envs/inari/lib/python3.7/site-packages/kb_python/validate.py", line 112, in inner
results = func(*args, *kwargs)
File "/home/kkiani/tools/anaconda3/envs/inari/lib/python3.7/site-packages/kb_python/count.py", line 149, in kallisto_bus
run_executable(command)
File "/home/kkiani/tools/anaconda3/envs/inari/lib/python3.7/site-packages/kb_python/dry/init.py", line 24, in inner
return func(args, **kwargs)
File "/home/kkiani/tools/anaconda3/envs/inari/lib/python3.7/site-packages/kb_python/utils.py", line 223, in run_executable
for line in p.stdout:
KeyboardInterrupt
Hello, thanks for putting together this wrapper and the helpful tutorials! I was trying to run count on the example data from the RNA velocity tutorial and keep getting the following error:
Thanks in advance for the help, Karun