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pachterlab / kallistobustools

kallisto | bustools workflow for pre-processing single-cell RNA-seq data
https://kallistobus.tools/
MIT License
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How to provide read1 and read2 fastq files from two lanes to `kb count`? #37

Closed naity2 closed 2 years ago

naity2 commented 2 years ago

Dear Authors,

I was wondering how should I provide 10X read1 and read2 fastq files from both lanes to kb count?

Thanks very much!

Yenaled commented 2 years ago

Just put the lanes one after another, e.g.

R1_lane1.fq R2_lane1.fq R1_lane2.fq R2_lane2.fq

naity2 commented 2 years ago

Just put the lanes one after another, e.g.

R1_lane1.fq R2_lane1.fq R1_lane2.fq R2_lane2.fq

Great, thank you!