merge devel into master

[Lioscro]

General

• Bumped ngs-tools>=1.7.3.

index

• [DEPRECATION] Split index generation using -n has been fully deprecated.

count

• Fixed a minor issue with --workflow kite:10xFB, where bustools project would be called before bustools correct (the order should be opposite). This fix required a bump to the ngs-tools dependency.
• Support for --workflow lamanno for -x smartseq3.
• [DEPRECATION] Counting using split indices by providing a comma-delimited list to -i has been fully deprecated.
• Support for whitelist (-w option) for bulk, smartseq2 and smartseq3 technologies.
• Added support for -x 10XV3_ULTIMA.

[codecov-commenter]

Codecov Report

Merging #162 (03796ff) into master (b418345) will decrease coverage by 4.09%. The diff coverage is 52.14%.

@@            Coverage Diff             @@
##           master     #162      +/-   ##
==========================================
- Coverage   96.98%   92.88%   -4.10%     
==========================================
  Files          14       14              
  Lines        1626     1617       -9     
==========================================
- Hits         1577     1502      -75     
- Misses         49      115      +66     

Impacted Files	Coverage Δ
kb_python/count.py	83.87% <41.66%> (-10.84%)	:arrow_down:
kb_python/dry/utils.py	91.83% <69.23%> (-8.17%)	:arrow_down:
kb_python/config.py	95.78% <100.00%> (+0.18%)	:arrow_up:
kb_python/constants.py	100.00% <100.00%> (ø)
kb_python/utils.py	98.44% <100.00%> (+0.01%)	:arrow_up:

---

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update b418345...03796ff. Read the comment docs.