command not found after pip3 installation

pachterlab / kb_python

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing

https://www.kallistobus.tools/

BSD 2-Clause "Simplified" License

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command not found after pip3 installation #185

Closed tsofiya closed 1 year ago

tsofiya commented 1 year ago

Hi, I'm trying to install kallisto-bus using pip3 command: pip3 install kb-python After installation is finished (no errors shows), I tried using the tool using kb command, but it just writes: kb: command not found Am I missing something? Thanks!

Lioscro commented 1 year ago

It's probably due to how your python installation and/or paths are set up. Simplest way to get around the binary would be

python3 -c 'from kb_python.main import main; main()'

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