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pachterlab / kb_python

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
https://www.kallistobus.tools/
BSD 2-Clause "Simplified" License
141 stars 24 forks source link

[Labels: Question] Kallisto Bustools workflow to demultiplex pooled Single Cells #190

Closed AndreaMariani-AM closed 1 year ago

AndreaMariani-AM commented 1 year ago

Hi,

First of all i'd like to congratulate with the team for the tools/workflow.

I'd like to ask a question:

Is Kallisto Bustools suited for demultiplexing pooled cells of a Singe Cell RNAseq experiment? If not, are you planning to expand the workflow to include it?

I am thinking some like the cellranger multi function of CellRanger software

Thanks, Andrea

AndreaMariani-AM commented 1 year ago

closed because i have found a previous solution for the problem: https://github.com/pachterlab/kb_python/issues/136