search

pachterlab / kb_python

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
https://www.kallistobus.tools/
BSD 2-Clause "Simplified" License
141 stars 24 forks source link

Print bug during kallisto part #208

Closed BenjaminDEMAILLE closed 11 months ago

BenjaminDEMAILLE commented 1 year ago

HI ! in Callisto part I detected a print bug 

Last login: Mon Jul 10 09:17:19 on ttys000
benjamin@macbook-pro-de-benjamin ~ % python3 /Users/benjamin/Dropbox\ \(U932\)/Salmon\ team/NGS/Lung/KPEpAndStr/scripts/Velo_KPEAndStr.py
[2023-07-10 09:17:44,193]   DEBUG [main] Printing verbose output
[2023-07-10 09:17:46,428]   DEBUG [main] kallisto binary located at /opt/homebrew/lib/python3.11/site-packages/kb_python/bins/compiled/kallisto/kallisto
[2023-07-10 09:17:46,429]   DEBUG [main] bustools binary located at /opt/homebrew/lib/python3.11/site-packages/kb_python/bins/compiled/bustools/bustools
[2023-07-10 09:17:46,429]   DEBUG [main] Creating `/Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp` directory
[2023-07-10 09:17:46,431]   DEBUG [main] Namespace(list=False, command='count', tmp=None, keep_tmp=False, verbose=True, i='/Users/benjamin/index/transcriptome.idx', g='/Users/benjamin/index/t2g.txt', x='10XV3', o='/Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2', w=None, t=10, m='60G', strand=None, workflow='lamanno', em=False, umi_gene=False, mm=False, tcc=False, filter='bustools', filter_threshold=None, c1='/Users/benjamin/index/spliced_t2c.txt', c2='/Users/benjamin/index/unspliced_t2c.txt', overwrite=True, dry_run=False, loom=False, h5ad=False, cellranger=True, gene_names=False, report=False, no_inspect=False, kallisto='/opt/homebrew/lib/python3.11/site-packages/kb_python/bins/compiled/kallisto/kallisto', bustools='/opt/homebrew/lib/python3.11/site-packages/kb_python/bins/compiled/bustools/bustools', no_validate=False, parity=None, fragment_l=None, fragment_s=None, fastqs=['/Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/fastqs/KP_ES_W2_S2/KP_ES_W2_S2_S2_L001_R1_001.fastq.gz', '/Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/fastqs/KP_ES_W2_S2/KP_ES_W2_S2_S2_L001_R2_001.fastq.gz'])
[2023-07-10 09:17:48,906]    INFO [count_lamanno] Using index /Users/benjamin/index/transcriptome.idx to generate BUS file to /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2 from
[2023-07-10 09:17:48,906]    INFO [count_lamanno]         /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/fastqs/KP_ES_W2_S2/KP_ES_W2_S2_S2_L001_R1_001.fastq.gz
[2023-07-10 09:17:48,906]    INFO [count_lamanno]         /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/fastqs/KP_ES_W2_S2/KP_ES_W2_S2_S2_L001_R2_001.fastq.gz
[2023-07-10 09:17:48,907]   DEBUG [count_lamanno] kallisto bus -i /Users/benjamin/index/transcriptome.idx -o /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2 -x 10XV3 -t 10 /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/fastqs/KP_ES_W2_S2/KP_ES_W2_S2_S2_L001_R1_001.fastq.gz /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/fastqs/KP_ES_W2_S2/KP_ES_W2_S2_S2_L001_R2_001.fastq.gz
[2023-07-10 09:17:49,018]   DEBUG [count_lamanno] 
[2023-07-10 09:17:49,018]   DEBUG [count_lamanno] [bus] Note: Strand option was not specified; setting it to --fr-stranded for specified technology
[2023-07-10 09:18:15,210]   DEBUG [count_lamanno] [index] k-mer length: 31
[2023-07-10 09:18:27,486]   DEBUG [count_lamanno] [index] number of targets: 790,418
[2023-07-10 09:18:27,486]   DEBUG [count_lamanno] [index] number of k-mers: 1,112,133,022
[2023-07-10 09:18:27,486]   DEBUG [count_lamanno] [quant] will process sample 1: /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/fastqs/KP_ES_W2_S2/KP_ES_W2_S2_S2_L001_R1_001.fastq.gz
[2023-07-10 09:18:27,486]   DEBUG [count_lamanno] /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/fastqs/KP_ES_W2_S2/KP_ES_W2_S2_S2_L001_R2_001.fastq.gz
[2023-07-10 09:18:33,536]   DEBUG [count_lamanno] [quant] finding pseudoalignments for the reads ...
[2023-07-10 09:18:37,754]   DEBUG [count_lamanno] [progress] 1M reads processed (81.0% mapped)
[2023-07-10 09:18:42,467]   DEBUG [count_lamanno] [progress] 2M reads processed (81.0% mapped)
[2023-07-10 09:18:45,788]   DEBUG [count_lamanno] [progress] 3M reads processed (81.0% mapped)
[2023-07-10 09:18:50,515]   DEBUG [count_lamanno] [progress] 4M reads processed (81.0% mapped)
[2023-07-10 09:18:53,889]   DEBUG [count_lamanno] [progress] 5M reads processed (81.0% mapped)
[2023-07-10 09:18:58,499]   DEBUG [count_lamanno] [progress] 6M reads processed (81.0% mapped)
[2023-07-10 09:19:01,881]   DEBUG [count_lamanno] [progress] 7M reads processed (81.0% mapped)
[2023-07-10 09:19:06,454]   DEBUG [count_lamanno] [progress] 8M reads processed (81.0% mapped)
[2023-07-10 09:19:10,456]   DEBUG [count_lamanno] [progress] 9M reads processed (81.0% mapped)
[2023-07-10 09:19:15,603]   DEBUG [count_lamanno] [progress] 10M reads processed (81.0% mapped)
[2023-07-10 09:19:19,340]   DEBUG [count_lamanno] [progress] 11M reads processed (81.0% mapped)
[2023-07-10 09:19:24,393]   DEBUG [count_lamanno] [progress] 12M reads processed (81.0% mapped)
[2023-07-10 09:19:27,699]   DEBUG [count_lamanno] [progress] 13M reads processed (81.0% mapped)
[2023-07-10 09:19:32,508]   DEBUG [count_lamanno] [progress] 14M reads processed (81.0% mapped)
[2023-07-10 09:19:35,780]   DEBUG [count_lamanno] [progress] 15M reads processed (81.0% mapped)
[2023-07-10 09:19:40,369]   DEBUG [count_lamanno] [progress] 16M reads processed (81.0% mapped)
[2023-07-10 09:19:43,851]   DEBUG [count_lamanno] [progress] 17M reads processed (81.0% mapped)
[2023-07-10 09:19:48,711]   DEBUG [count_lamanno] [progress] 18M reads processed (81.0% mapped)
[2023-07-10 09:19:52,666]   DEBUG [count_lamanno] [progress] 19M reads processed (81.0% mapped)
[2023-07-10 09:19:57,807]   DEBUG [count_lamanno] [progress] 20M reads processed (81.0% mapped)
[2023-07-10 09:20:01,003]   DEBUG [count_lamanno] [progress] 22M reads processed (81.0% mapped)
[2023-07-10 09:20:06,059]   DEBUG [count_lamanno] [progress] 23M reads processed (81.0% mapped)
[2023-07-10 09:20:09,559]   DEBUG [count_lamanno] [progress] 24M reads processed (81.0% mapped)
[2023-07-10 09:20:14,942]   DEBUG [count_lamanno] [progress] 25M reads processed (81.0% mapped)
[2023-07-10 09:20:17,823]   DEBUG [count_lamanno] [progress] 26M reads processed (81.0% mapped)
[2023-07-10 09:20:22,386]   DEBUG [count_lamanno] [progress] 27M reads processed (81.0% mapped)
[2023-07-10 09:20:25,304]   DEBUG [count_lamanno] [progress] 28M reads processed (81.0% mapped)
[2023-07-10 09:20:29,845]   DEBUG [count_lamanno] [progress] 29M reads processed (81.0% mapped)
[2023-07-10 09:20:32,857]   DEBUG [count_lamanno] [progress] 30M reads processed (81.0% mapped)
[2023-07-10 09:20:37,524]   DEBUG [count_lamanno] [progress] 31M reads processed (81.0% mapped)
[2023-07-10 09:20:40,410]   DEBUG [count_lamanno] [progress] 32M reads processed (81.0% mapped)
[2023-07-10 09:20:45,002]   DEBUG [count_lamanno] [progress] 33M reads processed (81.0% mapped)
[2023-07-10 09:20:48,211]   DEBUG [count_lamanno] [progress] 34M reads processed (81.0% mapped)
[2023-07-10 09:20:52,634]   DEBUG [count_lamanno] [progress] 35M reads processed (81.0% mapped)
[2023-07-10 09:20:55,809]   DEBUG [count_lamanno] [progress] 36M reads processed (81.0% mapped)
[2023-07-10 09:21:00,086]   DEBUG [count_lamanno] [progress] 37M reads processed (81.0% mapped)
[2023-07-10 09:21:03,306]   DEBUG [count_lamanno] [progress] 38M reads processed (81.0% mapped)
[2023-07-10 09:21:07,809]   DEBUG [count_lamanno] [progress] 39M reads processed (81.0% mapped)
[2023-07-10 09:21:10,792]   DEBUG [count_lamanno] [progress] 40M reads processed (81.0% mapped)
[2023-07-10 09:21:14,971]   DEBUG [count_lamanno] [progress] 41M reads processed (81.0% mapped)
[2023-07-10 09:21:18,500]   DEBUG [count_lamanno] [progress] 42M reads processed (81.0% mapped)
[2023-07-10 09:21:22,689]   DEBUG [count_lamanno] [progress] 44M reads processed (81.0% mapped)
[2023-07-10 09:21:26,097]   DEBUG [count_lamanno] [progress] 45M reads processed (81.0% mapped)
[2023-07-10 09:21:30,334]   DEBUG [count_lamanno] [progress] 46M reads processed (81.0% mapped)
[2023-07-10 09:21:33,436]   DEBUG [count_lamanno] [progress] 47M reads processed (81.0% mapped)
[2023-07-10 09:21:37,818]   DEBUG [count_lamanno] [progress] 48M reads processed (81.0% mapped)
[2023-07-10 09:21:41,071]   DEBUG [count_lamanno] [progress] 49M reads processed (81.0% mapped)
[2023-07-10 09:21:45,337]   DEBUG [count_lamanno] [progress] 50M reads processed (81.0% mapped)
[2023-07-10 09:21:48,433]   DEBUG [count_lamanno] [progress] 51M reads processed (81.0% mapped)
[2023-07-10 09:21:53,011]   DEBUG [count_lamanno] [progress] 52M reads processed (81.0% mapped)
[2023-07-10 09:21:56,332]   DEBUG [count_lamanno] [progress] 53M reads processed (81.0% mapped)
[2023-07-10 09:22:00,793]   DEBUG [count_lamanno] [progress] 54M reads processed (81.0% mapped)
[2023-07-10 09:22:04,010]   DEBUG [count_lamanno] [progress] 55M reads processed (81.0% mapped)
[2023-07-10 09:22:08,708]   DEBUG [count_lamanno] [progress] 56M reads processed (81.0% mapped)
[2023-07-10 09:22:11,787]   DEBUG [count_lamanno] [progress] 57M reads processed (81.0% mapped)
[2023-07-10 09:22:16,511]   DEBUG [count_lamanno] [progress] 58M reads processed (81.0% mapped)
[2023-07-10 09:22:19,715]   DEBUG [count_lamanno] [progress] 59M reads processed (81.0% mapped)
[2023-07-10 09:22:24,279]   DEBUG [count_lamanno] [progress] 60M reads processed (81.0% mapped)
[2023-07-10 09:22:27,333]   DEBUG [count_lamanno] [progress] 61M reads processed (81.0% mapped)
[2023-07-10 09:22:31,861]   DEBUG [count_lamanno] [progress] 62M reads processed (81.0% mapped)
[2023-07-10 09:22:35,559]   DEBUG [count_lamanno] [progress] 63M reads processed (81.0% mapped)
[2023-07-10 09:22:40,221]   DEBUG [count_lamanno] [progress] 65M reads processed (81.0% mapped)
[2023-07-10 09:22:43,748]   DEBUG [count_lamanno] [progress] 66M reads processed (81.0% mapped)
[2023-07-10 09:22:48,395]   DEBUG [count_lamanno] [progress] 67M reads processed (81.0% mapped)
[2023-07-10 09:22:51,880]   DEBUG [count_lamanno] [progress] 68M reads processed (81.0% mapped)
[2023-07-10 09:22:56,111]   DEBUG [count_lamanno] [progress] 69M reads processed (81.0% mapped)
[2023-07-10 09:22:59,507]   DEBUG [count_lamanno] [progress] 70M reads processed (81.0% mapped)
[2023-07-10 09:23:03,741]   DEBUG [count_lamanno] [progress] 71M reads processed (81.0% mapped)
[2023-07-10 09:23:07,211]   DEBUG [count_lamanno] [progress] 72M reads processed (81.0% mapped)
[2023-07-10 09:23:11,489]   DEBUG [count_lamanno] [progress] 73M reads processed (81.0% mapped)
[2023-07-10 09:23:14,958]   DEBUG [count_lamanno] [progress] 74M reads processed (81.0% mapped)
[2023-07-10 09:23:19,591]   DEBUG [count_lamanno] [progress] 75M reads processed (81.0% mapped)
[2023-07-10 09:23:23,126]   DEBUG [count_lamanno] [progress] 76M reads processed (81.0% mapped)
[2023-07-10 09:23:27,781]   DEBUG [count_lamanno] [progress] 77M reads processed (81.0% mapped)
[2023-07-10 09:23:31,295]   DEBUG [count_lamanno] [progress] 78M reads processed (81.0% mapped)
[2023-07-10 09:23:35,122]   DEBUG [count_lamanno] [progress] 79M reads processed (81.0% mapped)
[2023-07-10 09:23:38,451]   DEBUG [count_lamanno] [progress] 80M reads processed (81.0% mapped)
[2023-07-10 09:23:42,336]   DEBUG [count_lamanno] [progress] 81M reads processed (81.0% mapped)
[2023-07-10 09:23:46,166]   DEBUG [count_lamanno] [progress] 82M reads processed (81.0% mapped)
[2023-07-10 09:23:49,811]   DEBUG [count_lamanno] [progress] 83M reads processed (81.0% mapped)
[2023-07-10 09:23:53,594]   DEBUG [count_lamanno] [progress] 84M reads processed (81.0% mapped)
[2023-07-10 09:23:57,349]   DEBUG [count_lamanno] [progress] 85M reads processed (81.0% mapped)
[2023-07-10 09:24:01,205]   DEBUG [count_lamanno] [progress] 87M reads processed (81.0% mapped)
[2023-07-10 09:24:05,304]   DEBUG [count_lamanno] [progress] 88M reads processed (81.0% mapped)
[2023-07-10 09:24:09,015]   DEBUG [count_lamanno] [progress] 89M reads processed (81.0% mapped)
[2023-07-10 09:24:12,479]   DEBUG [count_lamanno] [progress] 90M reads processed (81.0% mapped)
[2023-07-10 09:24:16,331]   DEBUG [count_lamanno] [progress] 91M reads processed (81.0% mapped)
[2023-07-10 09:24:20,046]   DEBUG [count_lamanno] [progress] 92M reads processed (81.0% mapped)
[2023-07-10 09:24:23,994]   DEBUG [count_lamanno] [progress] 93M reads processed (81.0% mapped)
[2023-07-10 09:24:28,404]   DEBUG [count_lamanno] [progress] 94M reads processed (81.0% mapped)
[2023-07-10 09:24:32,042]   DEBUG [count_lamanno] [progress] 95M reads processed (81.0% mapped)
[2023-07-10 09:24:36,181]   DEBUG [count_lamanno] [progress] 96M reads processed (81.0% mapped)
[2023-07-10 09:24:40,201]   DEBUG [count_lamanno] [progress] 97M reads processed (81.0% mapped)
[2023-07-10 09:24:44,232]   DEBUG [count_lamanno] [progress] 98M reads processed (81.0% mapped)
[2023-07-10 09:24:48,111]   DEBUG [count_lamanno] [progress] 99M reads processed (81.0% mapped)
[2023-07-10 09:24:51,559]   DEBUG [count_lamanno] [progress] 100M reads processed (81.0% mapped)
[2023-07-10 09:24:55,830]   DEBUG [count_lamanno] [progress] 101M reads processed (81.0% mapped)
[2023-07-10 09:24:59,470]   DEBUG [count_lamanno] [progress] 102M reads processed (81.0% mapped)
[2023-07-10 09:25:03,943]   DEBUG [count_lamanno] [progress] 103M reads processed (81.0% mapped)
[2023-07-10 09:25:07,773]   DEBUG [count_lamanno] [progress] 104M reads processed (81.0% mapped)
[2023-07-10 09:25:11,362]   DEBUG [count_lamanno] [progress] 105M reads processed (81.0% mapped)
[2023-07-10 09:25:15,303]   DEBUG [count_lamanno] [progress] 106M reads processed (81.0% mapped)
[2023-07-10 09:25:19,240]   DEBUG [count_lamanno] [progress] 108M reads processed (81.0% mapped)
[2023-07-10 09:25:23,190]   DEBUG [count_lamanno] [progress] 109M reads processed (81.0% mapped)
[2023-07-10 09:25:27,306]   DEBUG [count_lamanno] [progress] 110M reads processed (81.0% mapped)
[2023-07-10 09:25:30,820]   DEBUG [count_lamanno] [progress] 111M reads processed (81.0% mapped)
[2023-07-10 09:25:35,003]   DEBUG [count_lamanno] [progress] 112M reads processed (81.0% mapped)
[2023-07-10 09:25:38,473]   DEBUG [count_lamanno] [progress] 113M reads processed (81.0% mapped)
[2023-07-10 09:25:42,381]   DEBUG [count_lamanno] [progress] 114M reads processed (81.0% mapped)
[2023-07-10 09:25:46,124]   DEBUG [count_lamanno] [progress] 115M reads processed (81.0% mapped)
[2023-07-10 09:25:49,632]   DEBUG [count_lamanno] [progress] 116M reads processed (81.0% mapped)
[2023-07-10 09:25:53,686]   DEBUG [count_lamanno] [progress] 117M reads processed (81.0% mapped)
[2023-07-10 09:25:57,326]   DEBUG [count_lamanno] [progress] 118M reads processed (81.0% mapped)
[2023-07-10 09:26:01,294]   DEBUG [count_lamanno] [progress] 119M reads processed (81.0% mapped)
[2023-07-10 09:26:05,251]   DEBUG [count_lamanno] [progress] 120M reads processed (81.0% mapped)
[2023-07-10 09:26:09,504]   DEBUG [count_lamanno] [progress] 121M reads processed (81.0% mapped)
[2023-07-10 09:26:13,219]   DEBUG [count_lamanno] [progress] 122M reads processed (81.0% mapped)
[2023-07-10 09:26:17,704]   DEBUG [count_lamanno] [progress] 123M reads processed (81.0% mapped)
[2023-07-10 09:26:21,104]   DEBUG [count_lamanno] [progress] 124M reads processed (81.0% mapped)
[2023-07-10 09:26:25,645]   DEBUG [count_lamanno] [progress] 125M reads processed (81.0% mapped)
[2023-07-10 09:26:29,146]   DEBUG [count_lamanno] [progress] 126M reads processed (81.0% mapped)
[2023-07-10 09:26:33,219]   DEBUG [count_lamanno] [progress] 127M reads processed (81.0% mapped)
[2023-07-10 09:26:36,721]   DEBUG [count_lamanno] [progress] 128M reads processed (81.0% mapped)
[2023-07-10 09:26:40,967]   DEBUG [count_lamanno] [progress] 130M reads processed (81.0% mapped)
[2023-07-10 09:26:44,188]   DEBUG [count_lamanno] [progress] 131M reads processed (81.0% mapped)
[2023-07-10 09:26:48,704]   DEBUG [count_lamanno] [progress] 132M reads processed (81.0% mapped)
[2023-07-10 09:26:51,911]   DEBUG [count_lamanno] [progress] 133M reads processed (81.0% mapped)
[2023-07-10 09:26:55,963]   DEBUG [count_lamanno] [progress] 134M reads processed (81.0% mapped)
[2023-07-10 09:26:59,182]   DEBUG [count_lamanno] [progress] 135M reads processed (81.0% mapped)
[2023-07-10 09:27:03,405]   DEBUG [count_lamanno] [progress] 136M reads processed (81.0% mapped)
[2023-07-10 09:27:06,908]   DEBUG [count_lamanno] [progress] 137M reads processed (81.0% mapped)
[2023-07-10 09:27:11,352]   DEBUG [count_lamanno] [progress] 138M reads processed (81.0% mapped)
[2023-07-10 09:27:14,661]   DEBUG [count_lamanno] [progress] 139M reads processed (81.0% mapped)
[2023-07-10 09:27:18,783]   DEBUG [count_lamanno] [progress] 140M reads processed (81.0% mapped)
[2023-07-10 09:27:22,031]   DEBUG [count_lamanno] [progress] 141M reads processed (81.0% mapped)
[2023-07-10 09:27:26,122]   DEBUG [count_lamanno] [progress] 142M reads processed (81.0% mapped)
[2023-07-10 09:27:29,646]   DEBUG [count_lamanno] [progress] 143M reads processed (81.0% mapped)
[2023-07-10 09:27:33,617]   DEBUG [count_lamanno] [progress] 144M reads processed (81.0% mapped)
[2023-07-10 09:27:37,222]   DEBUG [count_lamanno] [progress] 145M reads processed (81.0% mapped)
[2023-07-10 09:27:41,132]   DEBUG [count_lamanno] [progress] 146M reads processed (81.0% mapped)
[2023-07-10 09:27:44,844]   DEBUG [count_lamanno] [progress] 147M reads processed (81.0% mapped)
[2023-07-10 09:27:48,648]   DEBUG [count_lamanno] [progress] 148M reads processed (81.0% mapped)
[2023-07-10 09:27:52,053]   DEBUG [count_lamanno] [progress] 149M reads processed (81.0% mapped)
[2023-07-10 09:27:55,971]   DEBUG [count_lamanno] [progress] 150M reads processed (81.0% mapped)
[2023-07-10 09:27:59,263]   DEBUG [count_lamanno] [progress] 152M reads processed (81.0% mapped)
[2023-07-10 09:28:03,164]   DEBUG [count_lamanno] [progress] 153M reads processed (81.0% mapped)
[2023-07-10 09:28:07,088]   DEBUG [count_lamanno] [progress] 154M reads processed (81.0% mapped)
[2023-07-10 09:28:10,615]   DEBUG [count_lamanno] [progress] 155M reads processed (81.0% mapped)
[2023-07-10 09:28:14,545]   DEBUG [count_lamanno] [progress] 156M reads processed (81.0% mapped)
[2023-07-10 09:28:18,050]   DEBUG [count_lamanno] [progress] 157M reads processed (81.0% mapped)
[2023-07-10 09:28:21,900]   DEBUG [count_lamanno] [progress] 158M reads processed (81.0% mapped)
[2023-07-10 09:28:25,405]   DEBUG [count_lamanno] [progress] 159M reads processed (81.0% mapped)
[2023-07-10 09:28:29,125]   DEBUG [count_lamanno] [progress] 160M reads processed (81.0% mapped)
[2023-07-10 09:28:32,636]   DEBUG [count_lamanno] [progress] 161M reads processed (81.0% mapped)
[2023-07-10 09:28:36,491]   DEBUG [count_lamanno] [progress] 162M reads processed (81.0% mapped)
[2023-07-10 09:28:39,595]   DEBUG [count_lamanno] [progress] 163M reads processed (81.0% mapped)
[2023-07-10 09:28:43,523]   DEBUG [count_lamanno] [progress] 164M reads processed (81.0% mapped)
[2023-07-10 09:28:46,908]   DEBUG [count_lamanno] [progress] 165M reads processed (81.0% mapped)
[2023-07-10 09:28:51,198]   DEBUG [count_lamanno] [progress] 166M reads processed (81.0% mapped)
[2023-07-10 09:28:54,297]   DEBUG [count_lamanno] [progress] 167M reads processed (81.0% mapped)
[2023-07-10 09:28:58,477]   DEBUG [count_lamanno] [progress] 168M reads processed (81.0% mapped)
[2023-07-10 09:29:01,444]   DEBUG [count_lamanno] [progress] 169M reads processed (81.0% mapped)
[2023-07-10 09:29:05,870]   DEBUG [count_lamanno] [progress] 170M reads processed (81.0% mapped)
[2023-07-10 09:29:08,939]   DEBUG [count_lamanno] [progress] 171M reads processed (81.0% mapped)
[2023-07-10 09:29:13,110]   DEBUG [count_lamanno] [progress] 173M reads processed (81.0% mapped)
[2023-07-10 09:29:15,992]   DEBUG [count_lamanno] [progress] 174M reads processed (81.0% mapped)
[2023-07-10 09:29:20,439]   DEBUG [count_lamanno] [progress] 175M reads processed (81.0% mapped)
[2023-07-10 09:29:23,399]   DEBUG [count_lamanno] [progress] 176M reads processed (81.0% mapped)
[2023-07-10 09:29:27,849]   DEBUG [count_lamanno] [progress] 177M reads processed (81.0% mapped)
[2023-07-10 09:29:30,717]   DEBUG [count_lamanno] [progress] 178M reads processed (81.0% mapped)
[2023-07-10 09:29:35,261]   DEBUG [count_lamanno] [progress] 179M reads processed (81.0% mapped)
[2023-07-10 09:29:38,446]   DEBUG [count_lamanno] [progress] 180M reads processed (81.0% mapped)
[2023-07-10 09:29:42,370]   DEBUG [count_lamanno] [progress] 181M reads processed (81.0% mapped)
[2023-07-10 09:29:45,342]   DEBUG [count_lamanno] [progress] 182M reads processed (81.0% mapped)
[2023-07-10 09:29:49,784]   DEBUG [count_lamanno] [progress] 183M reads processed (81.0% mapped)
[2023-07-10 09:29:52,898]   DEBUG [count_lamanno] [progress] 184M reads processed (81.0% mapped)
[2023-07-10 09:29:57,132]   DEBUG [count_lamanno] [progress] 185M reads processed (81.0% mapped)
[2023-07-10 09:30:00,344]   DEBUG [count_lamanno] [progress] 186M reads processed (81.0% mapped)
[2023-07-10 09:30:04,829]   DEBUG [count_lamanno] [progress] 187M reads processed (81.0% mapped)
[2023-07-10 09:30:08,145]   DEBUG [count_lamanno] [progress] 188M reads processed (81.0% mapped)
[2023-07-10 09:30:12,516]   DEBUG [count_lamanno] [progress] 189M reads processed (81.0% mapped)
[2023-07-10 09:30:15,886]   DEBUG [count_lamanno] [progress] 190M reads processed (81.0% mapped)
[2023-07-10 09:30:20,194]   DEBUG [count_lamanno] [progress] 191M reads processed (81.0% mapped)
[2023-07-10 09:30:23,424]   DEBUG [count_lamanno] [progress] 192M reads processed (81.0% mapped)
[2023-07-10 09:30:27,814]   DEBUG [count_lamanno] [progress] 193M reads processed (81.0% mapped)
[2023-07-10 09:30:30,967]   DEBUG [count_lamanno] [progress] 195M reads processed (81.0% mapped)
[2023-07-10 09:30:35,146]   DEBUG [count_lamanno] [progress] 196M reads processed (81.0% mapped)
[2023-07-10 09:30:38,290]   DEBUG [count_lamanno] [progress] 197M reads processed (81.0% mapped)
[2023-07-10 09:30:42,604]   DEBUG [count_lamanno] [progress] 198M reads processed (81.0% mapped)
[2023-07-10 09:30:46,247]   DEBUG [count_lamanno] [progress] 199M reads processed (81.0% mapped)
[2023-07-10 09:30:50,301]   DEBUG [count_lamanno] [progress] 200M reads processed (81.0% mapped)
[2023-07-10 09:30:53,832]   DEBUG [count_lamanno] [progress] 201M reads processed (81.0% mapped)
[2023-07-10 09:30:57,566]   DEBUG [count_lamanno] [progress] 202M reads processed (81.0% mapped)
[2023-07-10 09:31:01,417]   DEBUG [count_lamanno] [progress] 203M reads processed (81.0% mapped)
[2023-07-10 09:31:05,034]   DEBUG [count_lamanno] [progress] 204M reads processed (81.0% mapped)
[2023-07-10 09:31:08,773]   DEBUG [count_lamanno] [progress] 205M reads processed (81.0% mapped)
[2023-07-10 09:31:12,594]   DEBUG [count_lamanno] [progress] 206M reads processed (81.0% mapped)
[2023-07-10 09:31:16,331]   DEBUG [count_lamanno] [progress] 207M reads processed (81.0% mapped)
[2023-07-10 09:31:20,044]   DEBUG [count_lamanno] [progress] 208M reads processed (81.0% mapped)
[2023-07-10 09:31:23,988]   DEBUG [count_lamanno] [progress] 209M reads processed (81.0% mapped)
[2023-07-10 09:31:27,596]   DEBUG [count_lamanno] [progress] 210M reads processed (81.0% mapped)
[2023-07-10 09:31:31,440]   DEBUG [count_lamanno] [progress] 211M reads processed (81.0% mapped)
[2023-07-10 09:31:35,022]   DEBUG [count_lamanno] [progress] 212M reads processed (81.0% mapped)
[2023-07-10 09:31:39,037]   DEBUG [count_lamanno] [progress] 213M reads processed (81.0% mapped)
[2023-07-10 09:31:42,408]   DEBUG [count_lamanno] [progress] 214M reads processed (81.0% mapped)
[2023-07-10 09:31:46,332]   DEBUG [count_lamanno] [progress] 216M reads processed (81.0% mapped)
[2023-07-10 09:31:49,729]   DEBUG [count_lamanno] [progress] 217M reads processed (81.0% mapped)
[2023-07-10 09:31:53,530]   DEBUG [count_lamanno] [progress] 218M reads processed (81.0% mapped)
[2023-07-10 09:31:57,017]   DEBUG [count_lamanno] [progress] 219M reads processed (81.0% mapped)
[2023-07-10 09:32:00,939]   DEBUG [count_lamanno] [progress] 220M reads processed (81.0% mapped)
[2023-07-10 09:32:04,207]   DEBUG [count_lamanno] [progress] 221M reads processed (81.0% mapped)
[2023-07-10 09:32:08,033]   DEBUG [count_lamanno] [progress] 222M reads processed (81.0% mapped)
[2023-07-10 09:32:11,668]   DEBUG [count_lamanno] [progress] 223M reads processed (81.0% mapped)
[2023-07-10 09:32:15,402]   DEBUG [count_lamanno] [progress] 224M reads processed (81.0% mapped)
[2023-07-10 09:32:19,118]   DEBUG [count_lamanno] [progress] 225M reads processed (81.0% mapped)
[2023-07-10 09:32:23,507]   DEBUG [count_lamanno] [progress] 226M reads processed (81.0% mapped)
[2023-07-10 09:32:26,942]   DEBUG [count_lamanno] [progress] 227M reads processed (81.0% mapped)
[2023-07-10 09:32:30,987]   DEBUG [count_lamanno] [progress] 228M reads processed (81.0% mapped)
[2023-07-10 09:32:34,780]   DEBUG [count_lamanno] [progress] 229M reads processed (81.0% mapped)
[2023-07-10 09:32:38,470]   DEBUG [count_lamanno] [progress] 230M reads processed (81.0% mapped)
[2023-07-10 09:32:42,314]   DEBUG [count_lamanno] [progress] 231M reads processed (81.0% mapped)
[2023-07-10 09:32:46,205]   DEBUG [count_lamanno] [progress] 232M reads processed (81.0% mapped)
[2023-07-10 09:32:50,063]   DEBUG [count_lamanno] [progress] 233M reads processed (81.0% mapped)
[2023-07-10 09:32:53,339]   DEBUG [count_lamanno] [progress] 234M reads processed (81.0% mapped)
[2023-07-10 09:32:57,280]   DEBUG [count_lamanno] [progress] 235M reads processed (81.0% mapped)
[2023-07-10 09:33:01,128]   DEBUG [count_lamanno] [progress] 236M reads processed (81.0% mapped)
[2023-07-10 09:33:04,639]   DEBUG [count_lamanno] [progress] 238M reads processed (81.0% mapped)
[2023-07-10 09:33:08,917]   DEBUG [count_lamanno] [progress] 239M reads processed (81.0% mapped)
[2023-07-10 09:33:12,441]   DEBUG [count_lamanno] [progress] 240M reads processed (81.0% mapped)
[2023-07-10 09:33:16,306]   DEBUG [count_lamanno] [progress] 241M reads processed (81.0% mapped)
[2023-07-10 09:33:20,151]   DEBUG [count_lamanno] [progress] 242M reads processed (81.0% mapped)
[2023-07-10 09:33:24,203]   DEBUG [count_lamanno] [progress] 243M reads processed (81.0% mapped)
[2023-07-10 09:33:27,848]   DEBUG [count_lamanno] [progress] 244M reads processed (81.0% mapped)
[2023-07-10 09:33:31,713]   DEBUG [count_lamanno] [progress] 245M reads processed (81.0% mapped)
[2023-07-10 09:33:35,334]   DEBUG [count_lamanno] [progress] 246M reads processed (81.0% mapped)
[2023-07-10 09:33:39,148]   DEBUG [count_lamanno] [progress] 247M reads processed (81.0% mapped)
[2023-07-10 09:33:42,844]   DEBUG [count_lamanno] [progress] 248M reads processed (81.0% mapped)
[2023-07-10 09:33:46,905]   DEBUG [count_lamanno] [progress] 249M reads processed (81.0% mapped)
[2023-07-10 09:33:50,624]   DEBUG [count_lamanno] [progress] 250M reads processed (81.0% mapped)
[2023-07-10 09:33:54,564]   DEBUG [count_lamanno] [progress] 251M reads processed (81.0% mapped)
[2023-07-10 09:33:58,180]   DEBUG [count_lamanno] [progress] 252M reads processed (81.0% mapped)
[2023-07-10 09:34:02,726]   DEBUG [count_lamanno] [progress] 253M reads processed (81.0% mapped)
[2023-07-10 09:34:06,319]   DEBUG [count_lamanno] [progress] 254M reads processed (81.0% mapped)
[2023-07-10 09:34:10,444]   DEBUG [count_lamanno] [progress] 255M reads processed (81.0% mapped)
[2023-07-10 09:34:14,038]   DEBUG [count_lamanno] [progress] 256M reads processed (81.0% mapped)
[2023-07-10 09:34:18,052]   DEBUG [count_lamanno] [progress] 257M reads processed (81.0% mapped)
[2023-07-10 09:34:21,898]   DEBUG [count_lamanno] [progress] 258M reads processed (81.0% mapped)
[2023-07-10 09:34:25,837]   DEBUG [count_lamanno] [progress] 260M reads processed (81.0% mapped)
[2023-07-10 09:34:29,568]   DEBUG [count_lamanno] [progress] 261M reads processed (81.0% mapped)
[2023-07-10 09:34:33,708]   DEBUG [count_lamanno] [progress] 262M reads processed (81.0% mapped)
[2023-07-10 09:34:37,233]   DEBUG [count_lamanno] [progress] 263M reads processed (81.0% mapped)
[2023-07-10 09:34:41,494]   DEBUG [count_lamanno] [progress] 264M reads processed (81.0% mapped)
[2023-07-10 09:34:45,344]   DEBUG [count_lamanno] [progress] 265M reads processed (81.0% mapped)
[2023-07-10 09:34:49,700]   DEBUG [count_lamanno] [progress] 266M reads processed (81.0% mapped)
[2023-07-10 09:34:53,214]   DEBUG [count_lamanno] [progress] 267M reads processed (81.0% mapped)
[2023-07-10 09:34:57,279]   DEBUG [count_lamanno] [progress] 268M reads processed (81.0% mapped)
[2023-07-10 09:35:00,885]   DEBUG [count_lamanno] [progress] 269M reads processed (81.0% mapped)
[2023-07-10 09:35:05,145]   DEBUG [count_lamanno] [progress] 270M reads processed (81.0% mapped)
[2023-07-10 09:35:08,694]   DEBUG [count_lamanno] [progress] 271M reads processed (81.0% mapped)
[2023-07-10 09:35:12,628]   DEBUG [count_lamanno] [progress] 272M reads processed (81.0% mapped)
[2023-07-10 09:35:16,147]   DEBUG [count_lamanno] [progress] 273M reads processed (81.0% mapped)
[2023-07-10 09:35:19,965]   DEBUG [count_lamanno] [progress] 274M reads processed (81.0% mapped)
[2023-07-10 09:35:24,157]   DEBUG [count_lamanno] [progress] 275M reads processed (81.0% mapped)
[2023-07-10 09:35:28,416]   DEBUG [count_lamanno] [progress] 276M reads processed (81.0% mapped)
[2023-07-10 09:35:32,704]   DEBUG [count_lamanno] [progress] 277M reads processed (81.0% mapped)
[2023-07-10 09:35:37,038]   DEBUG [count_lamanno] [progress] 278M reads processed (81.0% mapped)
[2023-07-10 09:35:41,171]   DEBUG [count_lamanno] [progress] 279M reads processed (81.0% mapped)
[2023-07-10 09:35:45,331]   DEBUG [count_lamanno] [progress] 281M reads processed (81.0% mapped)
[2023-07-10 09:35:49,556]   DEBUG [count_lamanno] [progress] 282M reads processed (81.0% mapped)
[2023-07-10 09:35:53,712]   DEBUG [count_lamanno] [progress] 283M reads processed (81.0% mapped)
[2023-07-10 09:35:57,799]   DEBUG [count_lamanno] [progress] 284M reads processed (81.0% mapped)
[2023-07-10 09:36:01,796]   DEBUG [count_lamanno] [progress] 285M reads processed (81.0% mapped)
[2023-07-10 09:36:05,555]   DEBUG [count_lamanno] [progress] 286M reads processed (81.0% mapped)
[2023-07-10 09:36:09,690]   DEBUG [count_lamanno] [progress] 287M reads processed (81.0% mapped)
[2023-07-10 09:36:12,904]   DEBUG [count_lamanno] [progress] 288M reads processed (81.0% mapped)
[2023-07-10 09:36:17,412]   DEBUG [count_lamanno] [progress] 289M reads processed (81.0% mapped)
[2023-07-10 09:36:20,493]   DEBUG [count_lamanno] [progress] 290M reads processed (81.0% mapped)
[2023-07-10 09:36:24,767]   DEBUG [count_lamanno] [progress] 291M reads processed (81.0% mapped)
[2023-07-10 09:36:27,634]   DEBUG [count_lamanno] [progress] 292M reads processed (81.0% mapped)
[2023-07-10 09:36:31,857]   DEBUG [count_lamanno] [progress] 293M reads processed (81.0% mapped)
[2023-07-10 09:36:35,417]   DEBUG [count_lamanno] [progress] 294M reads processed (81.0% mapped)
[2023-07-10 09:36:39,595]   DEBUG [count_lamanno] [progress] 295M reads processed (81.0% mapped)
[2023-07-10 09:36:43,147]   DEBUG [count_lamanno] [progress] 296M reads processed (81.0% mapped)
[2023-07-10 09:36:47,196]   DEBUG [count_lamanno] [progress] 297M reads processed (81.0% mapped)
[2023-07-10 09:36:51,075]   DEBUG [count_lamanno] [progress] 298M reads processed (81.0% mapped)
[2023-07-10 09:36:54,927]   DEBUG [count_lamanno] [progress] 299M reads processed (81.0% mapped)
[2023-07-10 09:36:58,255]   DEBUG [count_lamanno] [progress] 300M reads processed (81.0% mapped)
[2023-07-10 09:37:02,210]   DEBUG [count_lamanno] [progress] 301M reads processed (81.0% mapped)
[2023-07-10 09:37:05,439]   DEBUG [count_lamanno] [progress] 303M reads processed (81.0% mapped)
[2023-07-10 09:37:09,266]   DEBUG [count_lamanno] [progress] 304M reads processed (81.0% mapped)
[2023-07-10 09:37:12,575]   DEBUG [count_lamanno] [progress] 305M reads processed (81.0% mapped)
[2023-07-10 09:37:16,312]   DEBUG [count_lamanno] [progress] 306M reads processed (81.0% mapped)
[2023-07-10 09:37:20,163]   DEBUG [count_lamanno] [progress] 307M reads processed (81.0% mapped)
[2023-07-10 09:37:23,555]   DEBUG [count_lamanno] [progress] 308M reads processed (81.0% mapped)
[2023-07-10 09:37:27,450]   DEBUG [count_lamanno] [progress] 309M reads processed (81.0% mapped)
[2023-07-10 09:37:30,621]   DEBUG [count_lamanno] [progress] 310M reads processed (81.0% mapped)
[2023-07-10 09:37:34,532]   DEBUG [count_lamanno] [progress] 311M reads processed (81.0% mapped)
[2023-07-10 09:37:37,793]   DEBUG [count_lamanno] [progress] 312M reads processed (81.0% mapped)
[2023-07-10 09:37:42,051]   DEBUG [count_lamanno] [progress] 313M reads processed (81.0% mapped)
[2023-07-10 09:37:45,703]   DEBUG [count_lamanno] [progress] 314M reads processed (81.0% mapped)
[2023-07-10 09:37:49,560]   DEBUG [count_lamanno] [progress] 315M reads processed (81.0% mapped)
[2023-07-10 09:37:53,072]   DEBUG [count_lamanno] [progress] 316M reads processed (81.0% mapped)
[2023-07-10 09:37:56,919]   DEBUG [count_lamanno] [progress] 317M reads processed (81.0% mapped)
[2023-07-10 09:38:00,286]   DEBUG [count_lamanno] [progress] 318M reads processed (81.0% mapped)
[2023-07-10 09:38:03,867]   DEBUG [count_lamanno] [progress] 319M reads processed (81.0% mapped)
[2023-07-10 09:38:07,361]   DEBUG [count_lamanno] [progress] 320M reads processed (81.0% mapped)
[2023-07-10 09:38:11,394]   DEBUG [count_lamanno] [progress] 321M reads processed (81.0% mapped)
[2023-07-10 09:38:14,468]   DEBUG [count_lamanno] [progress] 322M reads processed (81.0% mapped)
[2023-07-10 09:38:18,364]   DEBUG [count_lamanno] [progress] 324M reads processed (81.0% mapped)
[2023-07-10 09:38:21,527]   DEBUG [count_lamanno] [progress] 325M reads processed (81.0% mapped)
[2023-07-10 09:38:25,392]   DEBUG [count_lamanno] [progress] 326M reads processed (81.0% mapped)
[2023-07-10 09:38:28,655]   DEBUG [count_lamanno] [progress] 327M reads processed (81.0% mapped)
[2023-07-10 09:38:32,889]   DEBUG [count_lamanno] [progress] 328M reads processed (81.0% mapped)
[2023-07-10 09:38:36,202]   DEBUG [count_lamanno] [progress] 329M reads processed (81.0% mapped)
[2023-07-10 09:38:40,007]   DEBUG [count_lamanno] [progress] 330M reads processed (81.0% mapped)
[2023-07-10 09:38:43,901]   DEBUG [count_lamanno] [progress] 331M reads processed (81.0% mapped)
[2023-07-10 09:38:47,756]   DEBUG [count_lamanno] [progress] 332M reads processed (81.0% mapped)
[2023-07-10 09:38:51,299]   DEBUG [count_lamanno] [progress] 333M reads processed (81.0% mapped)
[2023-07-10 09:38:55,432]   DEBUG [count_lamanno] [progress] 334M reads processed (81.0% mapped)
[2023-07-10 09:38:59,146]   DEBUG [count_lamanno] [progress] 335M reads processed (81.0% mapped)
[2023-07-10 09:39:02,773]   DEBUG [count_lamanno] [progress] 336M reads processed (81.0% mapped)
[2023-07-10 09:39:06,776]   DEBUG [count_lamanno] [progress] 337M reads processed (81.0% mapped)
[2023-07-10 09:39:10,377]   DEBUG [count_lamanno] [progress] 338M reads processed (81.0% mapped)
[2023-07-10 09:39:14,296]   DEBUG [count_lamanno] [progress] 339M reads processed (81.0% mapped)
[2023-07-10 09:39:18,278]   DEBUG [count_lamanno] [progress] 340M reads processed (81.0% mapped)
[2023-07-10 09:39:22,106]   DEBUG [count_lamanno] [progress] 341M reads processed (81.0% mapped)
[2023-07-10 09:39:26,136]   DEBUG [count_lamanno] [progress] 342M reads processed (81.0% mapped)
[2023-07-10 09:39:30,040]   DEBUG [count_lamanno] [progress] 343M reads processed (81.0% mapped)
[2023-07-10 09:39:33,216]   DEBUG [count_lamanno] [progress] 344M reads processed (81.0% mapped)
[2023-07-10 09:39:37,240]   DEBUG [count_lamanno] [progress] 346M reads processed (81.0% mapped)
[2023-07-10 09:39:40,428]   DEBUG [count_lamanno] [progress] 347M reads processed (81.0% mapped)
[2023-07-10 09:39:44,372]   DEBUG [count_lamanno] [progress] 348M reads processed (81.0% mapped)
[2023-07-10 09:39:47,968]   DEBUG [count_lamanno] [progress] 349M reads processed (81.0% mapped)
[2023-07-10 09:39:52,005]   DEBUG [count_lamanno] [progress] 350M reads processed (81.0% mapped)
[2023-07-10 09:39:55,509]   DEBUG [count_lamanno] [progress] 351M reads processed (81.0% mapped)
[2023-07-10 09:39:59,621]   DEBUG [count_lamanno] [progress] 352M reads processed (81.0% mapped)
[2023-07-10 09:40:03,226]   DEBUG [count_lamanno] [progress] 353M reads processed (81.0% mapped)
[2023-07-10 09:40:07,350]   DEBUG [count_lamanno] [progress] 354M reads processed (81.0% mapped)
[2023-07-10 09:40:10,837]   DEBUG [count_lamanno] [progress] 355M reads processed (81.0% mapped)
[2023-07-10 09:40:14,691]   DEBUG [count_lamanno] [progress] 356M reads processed (81.0% mapped)
[2023-07-10 09:40:18,318]   DEBUG [count_lamanno] [progress] 357M reads processed (81.0% mapped)
[2023-07-10 09:40:21,913]   DEBUG [count_lamanno] [progress] 358M reads processed (81.0% mapped)
[2023-07-10 09:40:25,950]   DEBUG [count_lamanno] [progress] 359M reads processed (81.0% mapped)
[2023-07-10 09:40:29,359]   DEBUG [count_lamanno] [progress] 360M reads processed (81.0% mapped)
[2023-07-10 09:40:33,350]   DEBUG [count_lamanno] [progress] 361M reads processed (81.0% mapped)
[2023-07-10 09:40:37,381]   DEBUG [count_lamanno] [progress] 362M reads processed (81.0% mapped)
[2023-07-10 09:40:41,240]   DEBUG [count_lamanno] [progress] 363M reads processed (81.0% mapped)
[2023-07-10 09:40:44,967]   DEBUG [count_lamanno] [progress] 364M reads processed (81.0% mapped)
[2023-07-10 09:40:48,672]   DEBUG [count_lamanno] [progress] 365M reads processed (81.0% mapped)
[2023-07-10 09:40:52,387]   DEBUG [count_lamanno] [progress] 367M reads processed (81.0% mapped)
[2023-07-10 09:40:55,804]   DEBUG [count_lamanno] [progress] 368M reads processed (81.0% mapped)
[2023-07-10 09:40:59,635]   DEBUG [count_lamanno] [progress] 369M reads processed (81.0% mapped)
[2023-07-10 09:41:02,918]   DEBUG [count_lamanno] [progress] 370M reads processed (81.0% mapped)
[2023-07-10 09:41:06,871]   DEBUG [count_lamanno] [progress] 371M reads processed (81.0% mapped)
[2023-07-10 09:41:10,480]   DEBUG [count_lamanno] [progress] 372M reads processed (81.0% mapped)
[2023-07-10 09:41:13,914]   DEBUG [count_lamanno] [progress] 373M reads processed (81.0% mapped)
[2023-07-10 09:41:17,841]   DEBUG [count_lamanno] [progress] 374M reads processed (81.0% mapped)
[2023-07-10 09:41:21,124]   DEBUG [count_lamanno] [progress] 375M reads processed (81.0% mapped)
[2023-07-10 09:41:24,831]   DEBUG [count_lamanno] [progress] 376M reads processed (81.0% mapped)
[2023-07-10 09:41:28,339]   DEBUG [count_lamanno] [progress] 377M reads processed (81.0% mapped)
[2023-07-10 09:41:32,142]   DEBUG [count_lamanno] [progress] 378M reads processed (81.0% mapped)
[2023-07-10 09:41:35,746]   DEBUG [count_lamanno] [progress] 379M reads processed (81.0% mapped)
[2023-07-10 09:41:39,467]   DEBUG [count_lamanno] [progress] 380M reads processed (81.0% mapped)
[2023-07-10 09:41:43,174]   DEBUG [count_lamanno] [progress] 381M reads processed (81.0% mapped)
[2023-07-10 09:41:46,802]   DEBUG [count_lamanno] [progress] 382M reads processed (81.0% mapped)
[2023-07-10 09:41:50,528]   DEBUG [count_lamanno] [progress] 383M reads processed (81.0% mapped)
[2023-07-10 09:41:54,026]   DEBUG [count_lamanno] [progress] 384M reads processed (81.0% mapped)
[2023-07-10 09:41:57,862]   DEBUG [count_lamanno] [progress] 385M reads processed (81.0% mapped)
[2023-07-10 09:42:01,341]   DEBUG [count_lamanno] [progress] 386M reads processed (81.0% mapped)
[2023-07-10 09:42:05,203]   DEBUG [count_lamanno] [progress] 387M reads processed (81.0% mapped)
[2023-07-10 09:42:08,443]   DEBUG [count_lamanno] [progress] 389M reads processed (81.0% mapped)
[2023-07-10 09:42:12,278]   DEBUG [count_lamanno] [progress] 390M reads processed (81.0% mapped)
[2023-07-10 09:42:15,574]   DEBUG [count_lamanno] [progress] 391M reads processed (81.0% mapped)
[2023-07-10 09:42:19,382]   DEBUG [count_lamanno] [progress] 392M reads processed (81.0% mapped)
[2023-07-10 09:42:22,893]   DEBUG [count_lamanno] [progress] 393M reads processed (81.0% mapped)
[2023-07-10 09:42:26,701]   DEBUG [count_lamanno] [progress] 394M reads processed (81.0% mapped)
[2023-07-10 09:42:30,232]   DEBUG [count_lamanno] [progress] 395M reads processed (81.0% mapped)
[2023-07-10 09:42:33,984]   DEBUG [count_lamanno] [progress] 396M reads processed (81.0% mapped)
[2023-07-10 09:42:38,195]   DEBUG [count_lamanno] [progress] 397M reads processed (81.0% mapped)
[2023-07-10 09:42:42,604]   DEBUG [count_lamanno] [progress] 398M reads processed (81.0% mapped)
[2023-07-10 09:42:46,363]   DEBUG [count_lamanno] [progress] 399M reads processed (81.0% mapped)
[2023-07-10 09:42:50,309]   DEBUG [count_lamanno] [progress] 400M reads processed (81.0% mapped)
[2023-07-10 09:42:53,710]   DEBUG [count_lamanno] [progress] 401M reads processed (81.0% mapped)
[2023-07-10 09:42:57,647]   DEBUG [count_lamanno] [progress] 402M reads processed (81.0% mapped)
[2023-07-10 09:43:01,164]   DEBUG [count_lamanno] [progress] 403M reads processed (81.0% mapped)
[2023-07-10 09:43:04,930]   DEBUG [count_lamanno] [progress] 404M reads processed (81.0% mapped)
[2023-07-10 09:43:08,684]   DEBUG [count_lamanno] [progress] 405M reads processed (81.0% mapped)
[2023-07-10 09:43:12,345]   DEBUG [count_lamanno] [progress] 406M reads processed (81.0% mapped)
[2023-07-10 09:43:16,089]   DEBUG [count_lamanno] [progress] 407M reads processed (81.0% mapped)
[2023-07-10 09:43:19,951]   DEBUG [count_lamanno] [progress] 408M reads processed (81.0% mapped)
[2023-07-10 09:43:23,370]   DEBUG [count_lamanno] [progress] 409M reads processed (81.0% mapped)
[2023-07-10 09:43:27,208]   DEBUG [count_lamanno] [progress] 411M reads processed (81.0% mapped)
[2023-07-10 09:43:30,826]   DEBUG [count_lamanno] [progress] 412M reads processed (81.0% mapped)
[2023-07-10 09:43:34,676]   DEBUG [count_lamanno] [progress] 413M reads processed (81.0% mapped)
[2023-07-10 09:43:38,384]   DEBUG [count_lamanno] [progress] 414M reads processed (81.0% mapped)
[2023-07-10 09:43:41,989]   DEBUG [count_lamanno] [progress] 415M reads processed (81.0% mapped)
[2023-07-10 09:43:45,737]   DEBUG [count_lamanno] [progress] 416M reads processed (81.0% mapped)
[2023-07-10 09:43:49,597]   DEBUG [count_lamanno] [progress] 417M reads processed (81.0% mapped)
[2023-07-10 09:43:53,097]   DEBUG [count_lamanno] [progress] 418M reads processed (81.0% mapped)
[2023-07-10 09:43:57,150]   DEBUG [count_lamanno] [progress] 419M reads processed (81.0% mapped)
[2023-07-10 09:44:00,449]   DEBUG [count_lamanno] [progress] 420M reads processed (81.0% mapped)
[2023-07-10 09:44:04,159]   DEBUG [count_lamanno] [progress] 421M reads processed (81.0% mapped)
[2023-07-10 09:44:07,471]   DEBUG [count_lamanno] [progress] 422M reads processed (81.0% mapped)
[2023-07-10 09:44:11,419]   DEBUG [count_lamanno] [progress] 423M reads processed (81.0% mapped)
[2023-07-10 09:44:14,951]   DEBUG [count_lamanno] [progress] 424M reads processed (81.0% mapped)
[2023-07-10 09:44:18,877]   DEBUG [count_lamanno] [progress] 425M reads processed (81.0% mapped)
[2023-07-10 09:44:22,178]   DEBUG [count_lamanno] [progress] 426M reads processed (81.0% mapped)
[2023-07-10 09:44:26,324]   DEBUG [count_lamanno] [progress] 427M reads processed (81.0% mapped)
[2023-07-10 09:44:30,175]   DEBUG [count_lamanno] [progress] 428M reads processed (81.0% mapped)
[2023-07-10 09:44:34,063]   DEBUG [count_lamanno] [progress] 429M reads processed (81.0% mapped)
[2023-07-10 09:44:37,626]   DEBUG [count_lamanno] [progress] 430M reads processed (81.0% mapped)
[2023-07-10 09:44:41,600]   DEBUG [count_lamanno] [progress] 432M reads processed (81.0% mapped)
[2023-07-10 09:44:44,905]   DEBUG [count_lamanno] [progress] 433M reads processed (81.0% mapped)
[2023-07-10 09:44:49,028]   DEBUG [count_lamanno] [progress] 434M reads processed (81.0% mapped)
[2023-07-10 09:44:52,439]   DEBUG [count_lamanno] [progress] 435M reads processed (81.0% mapped)
[2023-07-10 09:44:56,438]   DEBUG [count_lamanno] [progress] 436M reads processed (81.0% mapped)
[2023-07-10 09:44:59,753]   DEBUG [count_lamanno] [progress] 437M reads processed (81.0% mapped)
[2023-07-10 09:45:03,930]   DEBUG [count_lamanno] [progress] 438M reads processed (81.0% mapped)
[2023-07-10 09:45:07,603]   DEBUG [count_lamanno] [progress] 439M reads processed (81.0% mapped)
[2023-07-10 09:45:11,557]   DEBUG [count_lamanno] [progress] 440M reads processed (81.0% mapped)
[2023-07-10 09:45:15,019]   DEBUG [count_lamanno] [progress] 441M reads processed (81.0% mapped)
[2023-07-10 09:45:18,950]   DEBUG [count_lamanno] [progress] 442M reads processed (81.0% mapped)
[2023-07-10 09:45:22,187]   DEBUG [count_lamanno] [progress] 443M reads processed (81.0% mapped)
[2023-07-10 09:45:26,225]   DEBUG [count_lamanno] [progress] 444M reads processed (81.0% mapped)
[2023-07-10 09:45:29,606]   DEBUG [count_lamanno] [progress] 445M reads processed (81.0% mapped)
[2023-07-10 09:45:33,424]   DEBUG [count_lamanno] [progress] 446M reads processed (81.0% mapped)
[2023-07-10 09:45:36,704]   DEBUG [count_lamanno] [progress] 447M reads processed (81.0% mapped)
[2023-07-10 09:45:40,905]   DEBUG [count_lamanno] [progress] 448M reads processed (81.0% mapped)
[2023-07-10 09:45:44,287]   DEBUG [count_lamanno] [progress] 449M reads processed (81.0% mapped)
[2023-07-10 09:45:48,653]   DEBUG [count_lamanno] [progress] 450M reads processed (81.0% mapped)
[2023-07-10 09:45:51,735]   DEBUG [count_lamanno] [progress] 451M reads processed (81.0% mapped)
[2023-07-10 09:45:55,549]   DEBUG [count_lamanno] [progress] 452M reads processed (81.0% mapped)
[2023-07-10 09:45:58,934]   DEBUG [count_lamanno] [progress] 454M reads processed (81.0% mapped)
[2023-07-10 09:46:03,000]   DEBUG [count_lamanno] [progress] 455M reads processed (81.0% mapped)
[2023-07-10 09:46:06,326]   DEBUG [count_lamanno] [progress] 456M reads processed (81.0% mapped)
[2023-07-10 09:46:10,576]   DEBUG [count_lamanno] [progress] 457M reads processed (81.0% mapped)
[2023-07-10 09:46:13,557]   DEBUG [count_lamanno] [progress] 458M reads processed (81.0% mapped)
[2023-07-10 09:46:17,976]   DEBUG [count_lamanno] [progress] 459M reads processed (81.0% mapped)
[2023-07-10 09:46:21,193]   DEBUG [count_lamanno] [progress] 460M reads processed (81.0% mapped)
[2023-07-10 09:46:25,278]   DEBUG [count_lamanno] [progress] 461M reads processed (81.0% mapped)
[2023-07-10 09:46:28,897]   DEBUG [count_lamanno] [progress] 462M reads processed (81.0% mapped)
[2023-07-10 09:46:32,695]   DEBUG [count_lamanno] [progress] 463M reads processed (81.0% mapped)
[2023-07-10 09:46:36,507]   DEBUG [count_lamanno] [progress] 464M reads processed (81.0% mapped)
[2023-07-10 09:46:40,364]   DEBUG [count_lamanno] [progress] 465M reads processed (81.0% mapped)
[2023-07-10 09:46:43,678]   DEBUG [count_lamanno] [progress] 466M reads processed (81.0% mapped)
[2023-07-10 09:46:47,749]   DEBUG [count_lamanno] [progress] 467M reads processed (81.0% mapped)
[2023-07-10 09:46:51,070]   DEBUG [count_lamanno] [progress] 468M reads processed (81.0% mapped)
[2023-07-10 09:46:55,007]   DEBUG [count_lamanno] [progress] 469M reads processed (81.0% mapped)
[2023-07-10 09:46:58,748]   DEBUG [count_lamanno] [progress] 470M reads processed (81.0% mapped)
[2023-07-10 09:47:02,789]   DEBUG [count_lamanno] [progress] 471M reads processed (81.0% mapped)
[2023-07-10 09:47:06,074]   DEBUG [count_lamanno] [progress] 472M reads processed (81.0% mapped)
[2023-07-10 09:47:10,226]   DEBUG [count_lamanno] [progress] 473M reads processed (81.0% mapped)
[2023-07-10 09:47:13,297]   DEBUG [count_lamanno] [progress] 475M reads processed (81.0% mapped)
[2023-07-10 09:47:17,692]   DEBUG [count_lamanno] [progress] 476M reads processed (81.0% mapped)
[2023-07-10 09:47:21,011]   DEBUG [count_lamanno] [progress] 477M reads processed (81.0% mapped)
[2023-07-10 09:47:24,849]   DEBUG [count_lamanno] [progress] 478M reads processed (81.0% mapped)
[2023-07-10 09:47:28,415]   DEBUG [count_lamanno] [progress] 479M reads processed (81.0% mapped)
[2023-07-10 09:47:31,929]   DEBUG [count_lamanno] [progress] 480M reads processed (81.0% mapped)
[2023-07-10 09:47:35,782]   DEBUG [count_lamanno] [progress] 481M reads processed (81.0% mapped)
[2023-07-10 09:47:39,314]   DEBUG [count_lamanno] [progress] 482M reads processed (81.0% mapped)
[2023-07-10 09:47:43,250]   DEBUG [count_lamanno] [progress] 483M reads processed (81.0% mapped)
[2023-07-10 09:47:46,579]   DEBUG [count_lamanno] [progress] 484M reads processed (81.0% mapped)
[2023-07-10 09:47:50,550]   DEBUG [count_lamanno] [progress] 485M reads processed (81.0% mapped)
[2023-07-10 09:47:53,868]   DEBUG [count_lamanno] [progress] 486M reads processed (81.0% mapped)
[2023-07-10 09:47:57,952]   DEBUG [count_lamanno] [progress] 487M reads processed (81.0% mapped)
[2023-07-10 09:48:01,385]   DEBUG [count_lamanno] [progress] 488M reads processed (81.0% mapped)
[2023-07-10 09:48:05,369]   DEBUG [count_lamanno] [progress] 489M reads processed (81.0% mapped)
[2023-07-10 09:48:08,808]   DEBUG [count_lamanno] [progress] 490M reads processed (81.0% mapped)
[2023-07-10 09:48:12,912]   DEBUG [count_lamanno] [progress] 491M reads processed (81.0% mapped)
[2023-07-10 09:48:16,427]   DEBUG [count_lamanno] [progress] 492M reads processed (81.0% mapped)
[2023-07-10 09:48:20,886]   DEBUG [count_lamanno] [progress] 493M reads processed (81.0% mapped)
[2023-07-10 09:48:24,040]   DEBUG [count_lamanno] [progress] 494M reads processed (81.0% mapped)
[2023-07-10 09:48:28,236]   DEBUG [count_lamanno] [progress] 495M reads processed (81.0% mapped)
[2023-07-10 09:48:31,057]   DEBUG [count_lamanno] [progress] 497M reads processed (81.0% mapped)
[2023-07-10 09:48:35,271]   DEBUG [count_lamanno] [progress] 498M reads processed (81.0% mapped)
[2023-07-10 09:48:38,699]   DEBUG [count_lamanno] [progress] 499M reads processed (81.0% mapped)
[2023-07-10 09:48:42,806]   DEBUG [count_lamanno] [progress] 500M reads processed (81.0% mapped)
[2023-07-10 09:48:46,156]   DEBUG [count_lamanno] [progress] 501M reads processed (81.0% mapped)
[2023-07-10 09:48:50,010]   DEBUG [count_lamanno] [progress] 502M reads processed (81.0% mapped)
[2023-07-10 09:48:53,777]   DEBUG [count_lamanno] [progress] 503M reads processed (81.0% mapped)
[2023-07-10 09:48:57,814]   DEBUG [count_lamanno] [progress] 504M reads processed (81.0% mapped)
[2023-07-10 09:49:01,359]   DEBUG [count_lamanno] [progress] 505M reads processed (81.0% mapped)
[2023-07-10 09:49:05,245]   DEBUG [count_lamanno] [progress] 506M reads processed (81.0% mapped)
[2023-07-10 09:49:08,791]   DEBUG [count_lamanno] [progress] 507M reads processed (81.0% mapped)
[2023-07-10 09:49:12,729]   DEBUG [count_lamanno] [progress] 508M reads processed (81.0% mapped)
[2023-07-10 09:49:16,239]   DEBUG [count_lamanno] [progress] 509M reads processed (81.0% mapped)
[2023-07-10 09:49:20,094]   DEBUG [count_lamanno] [progress] 510M reads processed (81.0% mapped)
[2023-07-10 09:49:23,672]   DEBUG [count_lamanno] [progress] 511M reads processed (81.0% mapped)
[2023-07-10 09:49:27,559]   DEBUG [count_lamanno] [progress] 512M reads processed (81.0% mapped)
[2023-07-10 09:49:31,204]   DEBUG [count_lamanno] [progress] 513M reads processed (81.0% mapped)
[2023-07-10 09:49:35,345]   DEBUG [count_lamanno] [progress] 514M reads processed (81.0% mapped)
[2023-07-10 09:49:39,259]   DEBUG [count_lamanno] [progress] 515M reads processed (81.0% mapped)
[2023-07-10 09:49:42,709]   DEBUG [count_lamanno] [progress] 516M reads processed (81.0% mapped)
[2023-07-10 09:49:46,568]   DEBUG [count_lamanno] [progress] 517M reads processed (81.0% mapped)
[2023-07-10 09:49:50,252]   DEBUG [count_lamanno] [progress] 519M reads processed (81.0% mapped)
[2023-07-10 09:49:54,168]   DEBUG [count_lamanno] [progress] 520M reads processed (81.0% mapped)
[2023-07-10 09:49:57,724]   DEBUG [count_lamanno] [progress] 521M reads processed (81.0% mapped)
[2023-07-10 09:50:01,717]   DEBUG [count_lamanno] [progress] 522M reads processed (81.0% mapped)
[2023-07-10 09:50:05,054]   DEBUG [count_lamanno] [progress] 523M reads processed (81.0% mapped)
[2023-07-10 09:50:09,507]   DEBUG [count_lamanno] [progress] 524M reads processed (81.0% mapped)
[2023-07-10 09:50:12,836]   DEBUG [count_lamanno] [progress] 525M reads processed (81.0% mapped)
[2023-07-10 09:50:17,227]   DEBUG [count_lamanno] [progress] 526M reads processed (81.0% mapped)              done
[2023-07-10 09:50:17,227]   DEBUG [count_lamanno] [quant] processed 526,943,327 reads, 426,761,106 reads pseudoaligned
[2023-07-10 09:50:24,887]   DEBUG [count_lamanno] 
[2023-07-10 09:51:29,945]   DEBUG [count_lamanno] /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/output.bus passed validation
[2023-07-10 09:51:29,946]    INFO [count_lamanno] Sorting BUS file /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/output.bus to /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp/output.s.bus
[2023-07-10 09:51:29,946]   DEBUG [count_lamanno] bustools sort -o /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp/output.s.bus -T /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp -t 10 -m 60G /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/output.bus
[2023-07-10 09:51:47,780]   DEBUG [count_lamanno] partition time: 5.86487s
[2023-07-10 09:51:53,885]   DEBUG [count_lamanno] all fits in buffer
[2023-07-10 09:52:00,957]   DEBUG [count_lamanno] Read in 426761106 BUS records
[2023-07-10 09:52:00,957]   DEBUG [count_lamanno] reading time 3.1114s
[2023-07-10 09:52:00,957]   DEBUG [count_lamanno] sorting time 56.4887s
[2023-07-10 09:52:00,957]   DEBUG [count_lamanno] writing time 4.56913s
[2023-07-10 09:52:16,308]   DEBUG [count_lamanno] /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp/output.s.bus passed validation
[2023-07-10 09:52:16,309]    INFO [count_lamanno] Whitelist not provided
[2023-07-10 09:52:16,309]    INFO [count_lamanno] Copying pre-packaged 10XV3 whitelist to /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2
[2023-07-10 09:52:16,600]    INFO [count_lamanno] Inspecting BUS file /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp/output.s.bus
[2023-07-10 09:52:16,600]   DEBUG [count_lamanno] bustools inspect -o /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/inspect.json -w /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/10x_version3_whitelist.txt /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp/output.s.bus
[2023-07-10 09:52:33,846]    INFO [count_lamanno] Correcting BUS records in /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp/output.s.bus to /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp/output.s.c.bus with whitelist /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/10x_version3_whitelist.txt
[2023-07-10 09:52:33,847]   DEBUG [count_lamanno] bustools correct -o /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp/output.s.c.bus -w /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/10x_version3_whitelist.txt /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp/output.s.bus
[2023-07-10 09:52:36,887]   DEBUG [count_lamanno] Found 6794880 barcodes in the on-list
[2023-07-10 09:52:48,090]   DEBUG [count_lamanno] Processed 154287919 BUS records
[2023-07-10 09:52:48,090]   DEBUG [count_lamanno] In on-list = 145714124
[2023-07-10 09:52:48,090]   DEBUG [count_lamanno] Corrected    = 1165395
[2023-07-10 09:52:48,091]   DEBUG [count_lamanno] Uncorrected  = 7408400
[2023-07-10 09:53:04,135]   DEBUG [count_lamanno] /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp/output.s.c.bus passed validation
[2023-07-10 09:53:04,136]    INFO [count_lamanno] Sorting BUS file /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp/output.s.c.bus to /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/output.unfiltered.bus
[2023-07-10 09:53:04,136]   DEBUG [count_lamanno] bustools sort -o /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/output.unfiltered.bus -T /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp -t 10 -m 60G /Users/benjamin/Dropbox (U932)/Salmon team/Data_storage/Seq_data/scRNASeq/KPEpAndStr/Velocity_data/KP_ES_W2_S2/tmp/output.s.c.bus

during mapping the % don't increment

Yenaled commented 12 months ago

There is no print bug -- there's no reason that % should change. When it does change, it only changes by 0.1% or so. Why should 1M reads have a different mapping rate than 500M reads...

BenjaminDEMAILLE commented 12 months ago

Ah. I miss understandood the meaning. I understood that is a global % of progress Le 10 juil. 2023 à 12:23, Delaney Sullivan @.***> a écrit : There is no print bug -- there's no reason that % should change. When it does change, it only changes by 0.1% or so. Why should 1M reads have a different mapping rate than 500M reads...

—Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you authored the thread.Message ID: @.***>