pachterlab / kma

Keep Me Around: Intron Retention Detection
GNU General Public License v2.0
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newIntronRetention error #12

Closed trptyrphe11 closed 7 years ago

trptyrphe11 commented 7 years ago

computing denominator Error in summarise_impl(.data, dots): invalid 'type' (character) of argument Traceback:

  1. newIntronRetention(xprs$tpm, intron_to_trans, xprs$condition)
  2. left_join(intronToUnion, targetExpression, by = "target_id") %>% . group_by(intron) %>% select(-(target_id)) %>% summarise_each(funs(sum), . -matches("gene"), -matches("intron_extension")) %>% arrange(intron) %>% . left_join(select(intronToUnion, intron, intron_extension) %>% . distinct(), by = c("intron"))
  3. withVisible(eval(quote(_fseq(_lhs)), env, env))
  4. eval(quote(_fseq(_lhs)), env, env)
  5. eval(expr, envir, enclos)
  6. _fseq(_lhs)
  7. freduce(value, _function_list)
  8. function_list[i]
  9. summarise_each(., funs(sum), -matches("gene"), -matches("intron_extension"))
  10. summariseeach(tbl, funs, lazyeval::lazy_dots(...))
  11. summarise_(tbl, .dots = vars)
  12. summarise_.tbl_df(tbl, .dots = vars)
  13. summarise_impl(.data, dots)