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pachterlab / kma

Keep Me Around: Intron Retention Detection
GNU General Public License v2.0
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Question about --extend parameter #15

Open lynnyi opened 6 years ago

lynnyi commented 6 years ago

I'm trying to understand what the extend parameter is doing. Does it affect the intron sequences that are outputted into intron.fa during the preprocessing step?

pimentel commented 6 years ago

yes. it extends into the x sonic region by X bases.