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pachterlab / kma

Keep Me Around: Intron Retention Detection
GNU General Public License v2.0
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Install error on linux #2

Open DrHale opened 9 years ago

DrHale commented 9 years ago

I had an issue installing kma on CentOS running R version 3.1.0 (2014-04-10) using RStudio.

The installation raised the following error: Error: /tmp/Rtmp519pGn/R.INSTALL17f366f68149/kma-master/man/check_groupings.Rd:16: Bad \link text

and then failed to install. Not sure why this was a fatal error since this is just the manual text.

So I downloaded the github and change line 16 from: \link{\code{dplyr::group_by}} to: \code{\link{dplyr::group_by}}

This resulted in a successful install with a just a warning: Rd warning: /tmp/RtmpKJbQaL/R.INSTALL188737d8a723/kma-master/man/check_groupings.Rd:16: missing link ‘dplyr::group_by’

ghost commented 5 years ago

I have the same issue on ubuntu 18.04. The best workaround for me is git kma, I change name to kma for simple. R CMD INSTALL kma in prompt. This bybass devtools.

BioLaoXu commented 5 years ago

delete the /tmp/Rtmp519pGn/R.INSTALL17f366f68149/kma-master/man/check_groupings.Rd:16,and save and R CMD INSTALL kma