Open LiLey opened 8 years ago
This Problem was caused by the fasta file. It seems that there is a problem parsing sequence names like >NP_852610.1 . Without .1 the denominator was calculated (for minimal example just add .1 to a sequence name). Although during hypothesis testing var_retention was always NA and pvalue / qvalue equaled to 1 or 0 (while in the worked example the two values are looking like some float values.).
Are there any other reasons for problem? Any formats of target_id's values (NP_852610.1, NP_852610, ENSMUST00000166431.9, "ENSMUST00000166431.9") does not change the fact, that the denominator is always NA
hello I tried to use Kma for the detection of intronretention in my RNA-seq data. Now I have the problem that with my data the dominator is not computed in R, maybe someone knows what might have gone wrong
Thanks in advance!