search

pachterlab / kma

Keep Me Around: Intron Retention Detection
GNU General Public License v2.0
29 stars 20 forks source link

generate_introns.py different number of introns in introns.bed and intron_to_transcripts.txt #8

Open fgypas opened 8 years ago

fgypas commented 8 years ago

Something I observed is that there are more introns in the introns.bed file and introns.fa file than in the intron_to_transcripts.txt file.

Is this something expected?

The problem is that I tried to run RSEM, but the entries in the fasta file are more than the ones in the annotation (that is generated from intron_to_transcripts.txt file).