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pachterlab / seqspec

machine-readable file format for genomic library sequence and structure
MIT License
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10x-RNA-v3 barcode file #25

Closed b-coli closed 10 months ago

b-coli commented 10 months ago

Hi,

I noticed that the 10x chromium v3 whitelist file included (737-august-2016) is the same as the v2 chemistry. Shouldn't it be the 3M-february-2018?

sbooeshaghi commented 10 months ago

Could you point me to the 10x documentation that describes the 10x barcode whitelists and which assay version go with which barcode whitelists?

b-coli commented 10 months ago

https://kb.10xgenomics.com/hc/en-us/articles/115004506263-What-is-a-barcode-whitelist-

On Wed, Nov 1, 2023 at 7:12 AM Sina Booeshaghi @.***> wrote:

Could you point me to the 10x documentation that describes the 10x barcode whitelists and which assay version go with which barcode whitelists?

— Reply to this email directly, view it on GitHub https://github.com/IGVF/seqspec/issues/25#issuecomment-1789028315, or unsubscribe https://github.com/notifications/unsubscribe-auth/AISRGZOQTCHCUJN6STXNS7TYCJKERAVCNFSM6AAAAAA6PY3FFWVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTOOBZGAZDQMZRGU . You are receiving this because you authored the thread.Message ID: @.***>

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sbooeshaghi commented 10 months ago

Thank you- I've corrected the onlist in the 10xv3 spec and have updated the corresponding html page.

https://github.com/IGVF/seqspec/commit/a707fdaeb91091af3ecedfff888fdc132f4ddf58