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pachterlab / sircel

Identify cell barcodes from single-cell genomics sequencing experiments
MIT License
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Define temporary directory #15

Closed eyalbenda closed 6 years ago

eyalbenda commented 6 years ago

On my linux machine my /tmp is very limited. Is there a way to define a temporary directory for unzipping files to be something else?

eyalbenda commented 6 years ago

Digging through the code, the scripts use python's tempdir module.

By prefixing the sircel command with TMP=somedirectory the temporary directory can be defined easily