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pachterlab / sleuth

Differential analysis of RNA-Seq
http://pachterlab.github.io/sleuth
GNU General Public License v3.0
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Error: package ‘dplyr’ could not be loaded #128

Open mictadlo opened 7 years ago

mictadlo commented 7 years ago

Hi, I used conda install r-sleuth but got an error:

Loading required package: methods
  Loading required package: ggplot2
  Loading required package: dplyr
  Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 
    namespace ‘DBI’ 0.3.1 is being loaded, but >= 0.4.1 is required
  Error: package ‘dplyr’ could not be loaded
  Execution halted

What did I miss?

Thank you in advance.

Michal

mschilli87 commented 7 years ago

I'm neither a sleuth developer nor a conda user.

But it seems your DBI package is outdated.

Try running 

update.packages()

or (if you use Bioconductor)

BiocInstaller::biocLite()

in an R session to update all outdated packages.

mictadlo commented 7 years ago

I noticed and I ran an older version of R and updated to R 3.2.2.0 and I did also conda install bioconductor-ballgown=2.2.0=r3.3.2_0 but now I got:

/work/lorencm/miniconda2/lib/R/bin/exec/R: symbol lookup error: /lustre/work-lustre/lorencm/miniconda2/lib/R/bin/exec/../../lib/../../libreadline.so.6: undefined symbol: PC

Any ideas?

Thank you in advance.

Michal