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pachterlab / sleuth

Differential analysis of RNA-Seq
http://pachterlab.github.io/sleuth
GNU General Public License v3.0
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Error while working on sleuth in Linux #149

Closed vasanthmandla closed 6 years ago

vasanthmandla commented 7 years ago

I am trying to run the sleuth in Linux environment . But, I am facing this error. kindly help to resolve this error.

Calls: sleuth_prep ... tryCatch -> tryCatchList -> tryCatchOne -> Execution halted

Thanks, Vasanth

warrenmcg commented 7 years ago

Hi @vasanthmandla,

Thanks for using sleuth! We need more information to be able to help you. I'm afraid we can't help identify the problem without this additional information.

Could you provide the code you used to call sleuth_prep and full output of messages from right after you call sleuth_prep until you get the error message? It should look something like this:

so <- sleuth_prep(s2c, target_mapping = t2g)
reading in kallisto results
dropping unused factor levels
.........
[[etc.]]
Error

We need the full output before we can start. Thanks!

warrenmcg commented 7 years ago

pinging @vasanthmandla: just wanted to check in to see if you could give us more information so we could help you? Thanks

pimentel commented 6 years ago

one last ping before we close this. could you provide any more info, @vasanthmandla?

thanks

vasanthmandla commented 6 years ago

Thank you very much for the follow-up. This issue was resolved.