Sleuth tpm and sleuth live

pachterlab / sleuth

Differential analysis of RNA-Seq

http://pachterlab.github.io/sleuth

GNU General Public License v3.0

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Sleuth tpm and sleuth live #165

Open bioinfo-dirty-jobs opened 6 years ago

bioinfo-dirty-jobs commented 6 years ago

How can extract tpm counts of all my samples from sleuth. If I try to use sleuth live view gnes not work on R3.3

apcamargo commented 6 years ago

You can get that using the sleuth_to_matrix function:

tpm_matrix <- sleuth_to_matrix(so, 'obs_raw', 'tpm')

pimentel commented 6 years ago

@bioinfo-dirty-jobs could you please detail your issue with sleuth_live? regardless, you can use sleuth_to_matrix as @apcamargo suggested (thanks for responding, btw)