I am running kallisto quant in the latest insilicodb/kallisto docker container on Ubuntu 18.04. I downloaded a prebuilt index referenced in the kallisto manual. Every paired-end sample is killed. These same samples can be successfully pseudoaligned on linux server. My local machines have >>3.2G max RAM mentioned in Bray et al.
Error is a little cryptic. Any ideas?
root@073fc4250464:/DATA# kallisto quant -i mus_musculus/transcriptome.idx -n 6 -o FVB_liver_1 -b 100 FVB_liver_1.1.fastq.gz FVB_liver_1.2.fastq.gz
[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 118,489
[index] number of k-mers: 100,614,952
Killed
umasstr
commented
4 years ago
I am running kallisto quant in the latest insilicodb/kallisto docker container on Ubuntu 18.04. I downloaded a prebuilt index referenced in the kallisto manual. Every paired-end sample is killed. These same samples can be successfully pseudoaligned on linux server. My local machines have >>3.2G max RAM mentioned in Bray et al.
Error is a little cryptic. Any ideas?