Drop hd5write.default import

pachterlab / sleuth

Differential analysis of RNA-Seq

http://pachterlab.github.io/sleuth

GNU General Public License v3.0

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Drop hd5write.default import #260

Closed mschilli87 closed 2 years ago

mschilli87 commented 2 years ago

This function is not exported by rhdf5 anymore in favour of the corresponding S3 method. While sleuth already does not use hd5write.default anywhere (anymore?), it still imports it, breaking the installation on up-to-date systems. This PR fixes this by dropping the unnecessary import statement.

Also see https://github.com/pachterlab/sleuth/issues/259#issuecomment-991189129.

wheatliz commented 2 years ago

Having followed the advice of previous posts and installing the sleuth package using git clone, and removing the hdf5 default dependency, I am unable to install sleuth.

Are there ANY workarounds? Or should I just switch to DESeq?