Open hanguojun007 opened 2 years ago
why you not filter the data firstly? i want get more transcripts, but some can't maping , for example: the /GENCODE/mouse/gencode.vM28.transcripts.fa , it get 40000s, but half is 0. so the q.value is very big finally. i have to use DESeq.
We do have a filter to improve false discovery rate: https://rdrr.io/github/pachterlab/sleuth/man/sleuth_prep.html
(see the filter options there, the default is the basic_filter)
why you not filter the data firstly? i want get more transcripts, but some can't maping , for example: the /GENCODE/mouse/gencode.vM28.transcripts.fa , it get 40000s, but half is 0. so the q.value is very big finally. i have to use DESeq.