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pachterlab / sleuth

Differential analysis of RNA-Seq
http://pachterlab.github.io/sleuth
GNU General Public License v3.0
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new release date? #270

Open jsalignon opened 2 years ago

jsalignon commented 2 years ago

Hello, Do you know when a new release will be released? Version 0.30.0 is not working as it is. The error "Error: package or namespace load failed for ‘sleuth’: object ‘h5write.default’ is not exported by 'namespace:rhdf5'" as been addressed in "https://github.com/pachterlab/sleuth/issues/259", however when using Conda or Docker one cannot use the latest github version and so the package cannot be used. Best, Jerome

Yenaled commented 2 years ago

Thanks for letting me know. I'm a bit busy right now but will put it on my to-do list. I'm meeting with Harold Pimentel (the first author of the original sleuth) in a couple weeks to discuss sleuth and, more generally, improvements to differential expression from pseudoalignment results. I will bring this release issue up then and discuss plans for a future release. In the meantime, please use sleuth not through conda/docker.

jsalignon commented 2 years ago

Thanks for the quick reply! In my case it is not possible as I am building a pipeline that can be used installation-free. Hopefully, the meeting with Harold Pimentel will solve it.

dpryan79 commented 2 years ago

Please tag a new release. I'm currently patching around this in the on-going Bioconda migration, but it's a fair bit of effort to maintain such patches.

Yenaled commented 2 years ago

@dpryan79 thanks, I've tagged a new release; let me know if it works and if there's anything else you need me to do.

Serenawitz commented 1 year ago

thank u！！