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pachterlab / sleuth

Differential analysis of RNA-Seq
http://pachterlab.github.io/sleuth
GNU General Public License v3.0
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version 0.28.1 does not function for some plots within sleuth_live #78

Open marypiper opened 8 years ago

marypiper commented 8 years ago

We think that sleuth is a really great tool, and thank you for your wonderful work on it! We generally don't have any problems using it, but upon updating to sleuth version 0.28.1, some of the plots in sleuth_live now throw an error. The error is: "Error: invalid argument type". We can no longer get the MA plot in addition to a few others. The PCA, heatmap plots and test tables still function fine.

I have one computer with version 0.28.0 and a different computer with 0.28.1. I can load the use the same so object in sleuth_live, and it will show me all plots for 0.28.0, but not for 0.28.1.

Best, Mary

aemoor commented 8 years ago

I had this error too when I used saved so objects with sleuth_live that were generated with 0.28.0. They work well with sleuth_live of 0.28.0 but result in the "Error: invalid argument type" with 0.28.1. When I rerun the sleuth analysis (same code) in 0.28.1 and recreated the so file from scratch I had no more plotting errors in 0.28.1. So just rerun your code and recreate the so file.