Closed rsbivand closed 8 months ago
The issue comes from irlba
(https://github.com/bwlewis/irlba/issues/70), which is used by the scater
package to run PCA (https://github.com/alanocallaghan/scater/issues/201), which is done in some unit tests. It seems that reinstalling irlba
from source would solve this problem. There has been a notice for developers of packages that link to Matrix: https://stat.ethz.ch/pipermail/r-package-devel/2023q4/010051.html. Since this problem isn't from Voyager itself and other packages using irlba
are affected, all I can do is to wait for an update in irlba
.
Confirmed on GitHub Actions that installing irlba
from source solves the problem, before say the next release of irlba
.
In running reverse dependency checks for
spdep
, I see a failure: functionas_cholmod_sparse
not provided by package 'Matrix' not caused by changes inspdep
.