Support `BioFormatsImage` and `EBImage` in `plotSpatialFeature`

pachterlab / voyager

From geospatial to spatial -omics

https://pachterlab.github.io/voyager/

Artistic License 2.0

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Support `BioFormatsImage` and `EBImage` in `plotSpatialFeature` #26

Closed lambdamoses closed 3 months ago

lambdamoses commented 5 months ago

Right now plotSpatialFeature and related functions (e.g. plotLocalResult and spatialReducedDim) can only plot SpatRasterImage. Now that SFE supports other types of images, the plotting function should be updated.

lambdamoses commented 5 months ago

Furthermore, there should be an option to scale the images by the max value present rather than max value allowed by the bit depth.