search

padlocbio / padloc

Locate antiviral defence systems in prokaryotic genomes
MIT License
43 stars 9 forks source link

Older `conda` versions install `padloc v1.1.0` rather than `padloc v2.0.0` #35

Closed leightonpayne closed 8 months ago

leightonpayne commented 8 months ago

For some reason, older versions of conda (possibly related to use of the older pycosat dependency solver) install padloc v1.1.0 rather than padloc v2.0.0 by default.

[!IMPORTANT] To avoid this issue, you can specify padloc v2.0.0 during installation (this should work regardless of conda version)

create -n padloc -c conda-forge -c bioconda -c padlocbio padloc=2.0.0

[!NOTE] To avoid future issues, you may also wish to:

  1. Make sure your conda installation is up-to-date 
    conda install -n base -c defaults 'conda>=23.9.0'
  2. Make sure the new libmamba solver is available and active 
    conda install -n base conda-libmamba-solver --solver=classic
conda config --set solver libmamba
NK181092 commented 5 months ago

Trying to install Padloc but the padloc database update command is not working