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padster / pyNeuroTrace

Python code for processing neural timeseries
https://padster.github.io/pyNeuroTrace/
Mozilla Public License 2.0
2 stars 2 forks source link

gpu functionality and performance #7

Closed danielmk closed 1 month ago

danielmk commented 2 months ago

Related to https://github.com/openjournals/joss-reviews/issues/6877

I was able to install with cupy and I would like to confirm the GPU performance claim. Would it be possible to get the data that was used in the paper (Figure4)? And the code that was used? Thank you.

Peter-Hogg commented 2 months ago

Yes, I'll add a notebook to the repo soon. I'm currently traveling so it might be a day or two.

Peter-Hogg commented 1 month ago

Sorry for the delay. I was hoping to be able to work on this during my trip, but my schedule was too busy. I've added the code used to generate the figures in the manuscript to the examples folder in a new Jupyter Notebook.